Locus 7761

Sequence ID 3L_DroMel_CAF1
Location 20,706,400 – 20,706,504
Length 104
Max. P 0.829153
window12640

overview

Window 0

Location 20,706,400 – 20,706,504
Length 104
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 91.48
Mean single sequence MFE -25.38
Consensus MFE -22.62
Energy contribution -22.78
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.38
Structure conservation index 0.89
SVM decision value 0.71
SVM RNA-class probability 0.829153
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20706400 104 + 23771897
--------UUUAUUGAAUCGUUUAAUUGACUUGAAUUUUUUCGUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAAGACCGAGGCGCGCGAUGGCCAACAACAA-ACCUAA
--------...........((((..(((...((((....))))...)))...(((((....((((((.((((((....)).))))))))))..)))))......))-)).... ( -24.30)
>DroPse_CAF1 6735 113 + 1
UCCUUAUAUUUGUUGUACCAUUUAAUUGACUUGACUUUUUUCAUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAAGACCGAGGCGCGCGAUGGCCAUCAACAAUACCUAA
.........((((((..........(((...(((......)))...)))...(((((....((((((.((((((....)).))))))))))..)))))..))))))....... ( -27.00)
>DroSec_CAF1 3110 104 + 1
--------UUUAUUGAACCGUUUAAUUGACUUGAAUUUUUUCGUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAAGACCGAGGCGCGCGAUGGCCAACAACAA-ACCUAA
--------...........((((..(((...((((....))))...)))...(((((....((((((.((((((....)).))))))))))..)))))......))-)).... ( -24.30)
>DroSim_CAF1 3093 104 + 1
--------UUUAUUGAACCGUUUAAUUGACUUGAAUUUUUUCGUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAAGACCGAGGCGCGCGAUGGCCAACAACAA-ACCUAA
--------...........((((..(((...((((....))))...)))...(((((....((((((.((((((....)).))))))))))..)))))......))-)).... ( -24.30)
>DroPer_CAF1 6723 113 + 1
UCCUUAUAUUUGUUGUACCAUUUAAUUGACUUGACUUUUUUCAUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAAGACCGAGGCGCGCGAUGGCCAUCAACAAUACCUAA
.........((((((..........(((...(((......)))...)))...(((((....((((((.((((((....)).))))))))))..)))))..))))))....... ( -27.00)
>consensus
________UUUAUUGAACCGUUUAAUUGACUUGAAUUUUUUCGUUGCAAAUAGGCCAAAAAGUGUGUACUUGUCCCAAGACCGAGGCGCGCGAUGGCCAACAACAA_ACCUAA
.........................(((...((((....))))...)))...(((((....((((((.((((((....)).))))))))))..)))))............... (-22.62 = -22.78 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:19 2006