Locus 7759

Sequence ID 3L_DroMel_CAF1
Location 20,703,856 – 20,703,962
Length 106
Max. P 0.719996
window12636

overview

Window 6

Location 20,703,856 – 20,703,962
Length 106
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 76.90
Mean single sequence MFE -15.30
Consensus MFE -11.25
Energy contribution -11.37
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.40
Structure conservation index 0.74
SVM decision value 0.40
SVM RNA-class probability 0.719996
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20703856 106 + 23771897
UCUUCCUAUUUAAUUAUUUUGUGUAUAUAAAUUAGCUAUACAUCAGGCACCAAAGCUUGCACAAGCAUGCAUUAGACCUCCUUGUUGUCUAAAAGGCUCCAUCAAA--------------
....................(((((((.........)))))))..((..((...((.(((....))).)).((((((.........))))))..))..))......-------------- ( -17.40)
>DroSec_CAF1 599 112 + 1
UCUUCCUUUUUAAUACUUUUGUGUAUAUAAAUUACCUAUACAUCAGGCACCAAUGCUUUCAU--------AUUAGACCUCCUUGUUGUCUAAAAGGCUCUAUCAAAUCUUAUAUUUACAA
..................(((((.((((((....(((.......))).......(((((...--------.((((((.........)))))))))))...........)))))).))))) ( -13.30)
>DroSim_CAF1 600 95 + 1
UCUUUCUAUUUAAUACUUUUGUGUAUAUAAAUUACCUAUACAUCAGGCACCAAAGCUUGCACAAGC----AUUAGACCUCUUUGCUGUCUAAAAGGCUC---------------------
...............((((((((((((.........))))))).(((((.((((((((((....))----)..))....))))).))))))))))....--------------------- ( -15.20)
>consensus
UCUUCCUAUUUAAUACUUUUGUGUAUAUAAAUUACCUAUACAUCAGGCACCAAAGCUUGCACAAGC____AUUAGACCUCCUUGUUGUCUAAAAGGCUC_AUCAAA______________
....(((.............(((((((.........)))))))(((((......)))))............((((((.........)))))).)))........................ (-11.25 = -11.37 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:15 2006