Locus 775

Sequence ID 3L_DroMel_CAF1
Location 2,319,873 – 2,319,966
Length 93
Max. P 0.869826
window1193

overview

Window 3

Location 2,319,873 – 2,319,966
Length 93
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 77.36
Mean single sequence MFE -24.32
Consensus MFE -13.92
Energy contribution -14.72
Covariance contribution 0.79
Combinations/Pair 1.16
Mean z-score -1.96
Structure conservation index 0.57
SVM decision value 0.87
SVM RNA-class probability 0.869826
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2319873 93 + 23771897
AUGCUGGCUUGA---AUCAAAAAU--------------AAGAUUUCCCC--GCAGCUUGAAUUUCAUUUCGCUGCGGUUGUUGGCCAUUUUUCCGGCUCCCCUGCCACCUUU
..((..((..((---(((......--------------..)))))..((--(((((..(((......))))))))))..))..)).........(((......)))...... ( -27.30)
>DroSec_CAF1 69002 92 + 1
AUGUUGGCUUGA---AUCAAAAAU--------------AAGAUUUCCCC--GCAGCUUGAAUUUCAUUUCGCUGCGAUUGUUGGCCAUUUU-UCGGCUCCCCUGCCACCUAA
....(((((.((---(((......--------------..)))))...(--(((((..(((......)))))))))......)))))....-..(((......)))...... ( -24.10)
>DroSim_CAF1 69268 92 + 1
AUGUUGGCUUGA---AUCAAAAAU--------------AAGAUUUCCCC--GCAGCUUGAAUUUCAUUUCGCUGCGAUUGUUGGCCAUUUU-CCGGCUCCCCUGCCACCUAA
....(((((.((---(((......--------------..)))))...(--(((((..(((......)))))))))......)))))....-..(((......)))...... ( -24.10)
>DroEre_CAF1 72393 92 + 1
AUGCUGGCUUCA---AUCAGAAAU--------------AAGAUUUCCCC--GCAGCUUGAAUUUCAUUUCGCUGCGAAUGUUGGCCAUUUU-CCGGCAUCCCUGCCAGCUGC
..((((((....---.........--------------..........(--(((((..(((......))))))))).(((((((.......-)))))))....))))))... ( -28.50)
>DroYak_CAF1 71904 95 + 1
AUGCUGGCUUGAAUAAUCAAGAAU--------------AAGAUUUCCCC--GCAGCUUGAAUUUCAUUUCGCUACGAUUGUUGGCCACUUU-CCGGCUCCCCUGCCACCUUC
....(((((..(((((((..(((.--------------.....)))...--(.(((..(((......)))))).)))))))))))))....-..(((......)))...... ( -20.20)
>DroAna_CAF1 65841 98 + 1
GAACUGGCUUAA---AUCAGAGAUGCGGCAUCUUAAAGAACGCUCCCCCGAGCAGCAUGAAUUUCAUUUGGC-GCAAUCGCUGGCUAUUUU-CCGC---------AGCACAA
....(((((...---..(((.((((((.((...........((((....))))...(((.....))).)).)-)).))).)))((......-..))---------))).)). ( -21.70)
>consensus
AUGCUGGCUUGA___AUCAAAAAU______________AAGAUUUCCCC__GCAGCUUGAAUUUCAUUUCGCUGCGAUUGUUGGCCAUUUU_CCGGCUCCCCUGCCACCUAA
..((..((((((....))))...............................(((((..(((......))))))))....))..)).........(((......)))...... (-13.92 = -14.72 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:53 2006