Locus 7747

Sequence ID 3L_DroMel_CAF1
Location 20,661,027 – 20,661,119
Length 92
Max. P 0.974925
window12614 window12615

overview

Window 4

Location 20,661,027 – 20,661,119
Length 92
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 91.91
Mean single sequence MFE -26.87
Consensus MFE -26.13
Energy contribution -26.47
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.31
Structure conservation index 0.97
SVM decision value 1.74
SVM RNA-class probability 0.974925
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20661027 92 + 23771897
UAAAACAUCCUCCU-UAGGAUCCCAAAAUAAUAAGUUUUUUGGGCUGGGAAAGGCCAAGUCAAUGUCAAUGGGGUUGGAUUGUAGGGGAUGCA
.....(((((((((-(((...(((((((.........)))))))))))).....((((.((.((....)).)).))))......))))))).. ( -25.10)
>DroSec_CAF1 33089 86 + 1
UA-AACAUCCUCCUGUAGGAUCCCAAAAUGAUAACUUUUUUGGGCUGGGAAAGGCCAAGUC------AAUGGGGUUGGAUUGUAGGGGAUGCA
..-..(((((.((((((((((((((...((((.......((((.((.....)).)))))))------).)))))))...)))))))))))).. ( -27.21)
>DroSim_CAF1 37929 86 + 1
UA-AACAUCCUCCUGUAGGAUCCCAGAAUGAUAACUUUUUUGGGCUGGGAAAGGCCAAGUC------AAUGGGGUUGGAUUGUAGGGGAUGCA
..-..(((((.((((((((((((((...((((.......((((.((.....)).)))))))------).)))))))...)))))))))))).. ( -28.31)
>consensus
UA_AACAUCCUCCUGUAGGAUCCCAAAAUGAUAACUUUUUUGGGCUGGGAAAGGCCAAGUC______AAUGGGGUUGGAUUGUAGGGGAUGCA
.....(((((.((((((((((((((.............(((((.((.....)).)))))..........)))))))...)))))))))))).. (-26.13 = -26.47 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 20,661,027 – 20,661,119
Length 92
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 91.91
Mean single sequence MFE -20.93
Consensus MFE -18.97
Energy contribution -19.30
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.70
Structure conservation index 0.91
SVM decision value 1.49
SVM RNA-class probability 0.958675
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20661027 92 - 23771897
UGCAUCCCCUACAAUCCAACCCCAUUGACAUUGACUUGGCCUUUCCCAGCCCAAAAAACUUAUUAUUUUGGGAUCCUA-AGGAGGAUGUUUUA
.(((((((((.........................((((......))))(((((((.........)))))))......-))).)))))).... ( -20.00)
>DroSec_CAF1 33089 86 - 1
UGCAUCCCCUACAAUCCAACCCCAUU------GACUUGGCCUUUCCCAGCCCAAAAAAGUUAUCAUUUUGGGAUCCUACAGGAGGAUGUU-UA
.(((((((((...((((........(------((((((((........))).....))))))........)))).....))).)))))).-.. ( -21.39)
>DroSim_CAF1 37929 86 - 1
UGCAUCCCCUACAAUCCAACCCCAUU------GACUUGGCCUUUCCCAGCCCAAAAAAGUUAUCAUUCUGGGAUCCUACAGGAGGAUGUU-UA
.(((((((((...((((........(------((((((((........))).....))))))........)))).....))).)))))).-.. ( -21.39)
>consensus
UGCAUCCCCUACAAUCCAACCCCAUU______GACUUGGCCUUUCCCAGCCCAAAAAAGUUAUCAUUUUGGGAUCCUACAGGAGGAUGUU_UA
.(((((((((.........................((((......))))(((((((.........))))))).......))).)))))).... (-18.97 = -19.30 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:53 2006