| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,656,223 – 20,656,323 |
| Length | 100 |
| Max. P | 0.969185 |
| Location | 20,656,223 – 20,656,323 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.19 |
| Mean single sequence MFE | -24.92 |
| Consensus MFE | -14.62 |
| Energy contribution | -15.46 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.969185 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20656223 100 - 23771897 C--CCAACU----UCUUGCCAGCGACUCAACUAAUGUAAUUUAAAAUGGUCGAGUGGCAAAUUACUCGGCCGUUGCGGACAUUCCGCACCC--------CAAUCCGCAAACUCC------ .--......----........(((....................(((((((((((((....)))))))))))))((((.....))))....--------.....))).......------ ( -28.40) >DroPse_CAF1 38767 94 - 1 C--CCCACU----UUCUCUC----UCCCAACUAAUGUAAUUUAAAAUGGACGAGUGGCAAAUUACUUAC-----UUGGACAUUCCACACC-----------AUCCGAAAGCACCAAACCA .--....((----(((....----.....((....)).......((((..(((((((........))))-----)))..)))).......-----------....))))).......... ( -12.90) >DroSim_CAF1 32640 100 - 1 C--CCAACU----UCUUGCCCGCGACUCAGCUAAUGUAAUUUAAAAUGGUCGAGUGGCAAAUUACUCGGCCGUUGCGGACUUUCCGCACCC--------CAAUCCGCAAACUCC------ .--......----........(((....................(((((((((((((....)))))))))))))((((.....))))....--------.....))).......------ ( -28.50) >DroYak_CAF1 211087 100 - 1 C--CCUACU----UCUUGUGCGCGACUCAACUAAUGUAAUUUAAAACGGACGAGUGGCAAAUUACUCGGCCGUUGCGGACAUUCCGCACCC--------CAAUCCACAGACUCC------ .--......----..(((((........................(((((.(((((((....))))))).)))))((((.....))))....--------.....))))).....------ ( -24.80) >DroAna_CAF1 28612 114 - 1 CCCCCAACUUGGUUCUUUGGCGCGACUCAACUAAUGUAAUUUAAAAUGGACGAGUGGCAAAUUACUCGGACAUUGCGGACAUUCCGCACCCUUGACACCCUUGCCACAGCUGCC------ ..........(((.((.(((((.(..((((..............((((..(((((((....)))))))..))))((((.....))))....))))....).))))).))..)))------ ( -30.00) >consensus C__CCAACU____UCUUGCCCGCGACUCAACUAAUGUAAUUUAAAAUGGACGAGUGGCAAAUUACUCGGCCGUUGCGGACAUUCCGCACCC________CAAUCCGCAAACUCC______ ..................................(((.......(((((.(((((((....))))))).)))))((((.....))))..................)))............ (-14.62 = -15.46 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:49 2006