| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,652,691 – 20,652,783 |
| Length | 92 |
| Max. P | 0.922764 |
| Location | 20,652,691 – 20,652,783 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 92.90 |
| Mean single sequence MFE | -18.30 |
| Consensus MFE | -15.59 |
| Energy contribution | -15.65 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.922764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20652691 92 - 23771897 AAAAAAAAACACAACAACAAUUG-AAUGCCAAAUUGAAAGUGGUUGACAGGCAACUGGAAAAACAAC---AGCCAAGGCAAUAGCUUCGAGUGUCC ................(((.(((-((.((...((((....((((((.(((....)))(.....)..)---)))))...)))).))))))).))).. ( -19.80) >DroSec_CAF1 25259 92 - 1 AAA---AAACACAACAACAAUUG-AAUGCCAAAUUGAAAGUGGUUGACAGGCAACUGGAAAAACAACAAGAGCCAAGGCAAUAGCUUCGAGUGUCC ...---..........(((.(((-((.((..........((.(((..(((....)))....))).))....((....))....))))))).))).. ( -17.30) >DroSim_CAF1 28734 93 - 1 AAA---AAACACAACAACAAUUGUAAGGCCAAAUUGAAAGUGGUUGACAGGCAACUGGAAAAACAACAAGAGCCAAGGCAAUAGCUUCGAGUGUCC ...---..((((..............(((....(((...((..((..(((....)))..)).))..)))..))).((((....))))...)))).. ( -17.90) >DroYak_CAF1 205872 90 - 1 AAAA--AAACACAACAACAAUUG-AAUGCCAAACUGAAAGUGGUUGACAGGCAACUGGAAAAACAAC---GGCCAAGGCAAUAACUUCGAGUGUUC ....--.........((((.(((-((((((..((.....))(((((.(((....)))(.....)..)---))))..)))).....))))).)))). ( -18.20) >consensus AAA___AAACACAACAACAAUUG_AAUGCCAAAUUGAAAGUGGUUGACAGGCAACUGGAAAAACAAC___AGCCAAGGCAAUAGCUUCGAGUGUCC ........((((.....(((((.........)))))...(.(((((.(((....)))..............((....))..))))).)..)))).. (-15.59 = -15.65 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:42 2006