Locus 774

Sequence ID 3L_DroMel_CAF1
Location 2,318,251 – 2,318,346
Length 95
Max. P 0.937460
window1192

overview

Window 2

Location 2,318,251 – 2,318,346
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 77.64
Mean single sequence MFE -17.17
Consensus MFE -2.78
Energy contribution -3.58
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.20
Structure conservation index 0.16
SVM decision value 1.26
SVM RNA-class probability 0.937460
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2318251 95 + 23771897
CUUACUGGAAAUUCAAUCUCAUUUGUAGAACAAUUGAUUCCCAGCAGACAGAAUUACAUUUCGUCUCUGCGAGUUUCCCUGCUCUGAAUACUUAA
......((((((((....(((.(((.....))).)))......(((((..(((......)))...)))))))))))))................. ( -21.90)
>DroSec_CAF1 67407 93 + 1
CUUACUCGAAAUUCAAUCUCAUUUGCUGAACAAUUGAUUUCCCGCAGACAGAAUUCCAUUUCGUC--UGCGAGUUUCCCUGCUUUGAAUACUUAA
.......(((((((....(((.(((.....))).)))......((((((.(((......))))))--)))))))))).................. ( -20.90)
>DroSim_CAF1 67452 93 + 1
CUUACUCGAAAUUCAAUCUCAUUUGUUGAACAAUUGAUUCCCCGCAGACAGAAUUCCAUUUCGUC--UGCGAGUUUCCCUGCUUUGAAUACUUAA
.......(((((((....(((.(((.....))).)))......((((((.(((......))))))--)))))))))).................. ( -21.70)
>DroEre_CAF1 70746 72 + 1
CUUACUUGAAAUUAAAUCCCAAUUAUAGAACAAUUGAU---------------------UUCGUC--UGCGAGUUUCCCUGCUUUGCAUACUUAA
.......((((((((..................)))))---------------------)))((.--(((((((......)).))))).)).... (  -9.77)
>DroYak_CAF1 70204 72 + 1
CUUACUCGAAAUGAAAUCUCAUUUAUAGAACAAUUGAA---------------------UUCGUC--UGGGAGUUUCCCUGCUUUGAAUGCUCAA
.....((.((((((....))))))...))....(((((---------------------((((..--.(((.....))).....)))))..)))) ( -11.60)
>consensus
CUUACUCGAAAUUCAAUCUCAUUUGUAGAACAAUUGAUU_CC_GCAGACAGAAUU_CAUUUCGUC__UGCGAGUUUCCCUGCUUUGAAUACUUAA
.......(((((......(((.(((.....))).))).......................((((....))))))))).................. ( -2.78 =  -3.58 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:52 2006