| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,317,241 – 2,317,339 |
| Length | 98 |
| Max. P | 0.691587 |
| Location | 2,317,241 – 2,317,339 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 79.82 |
| Mean single sequence MFE | -35.95 |
| Consensus MFE | -25.39 |
| Energy contribution | -26.94 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691587 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2317241 98 - 23771897 GUUCUAUUUCCCGGCU-UUGGCCC-GGCAAUAACAAUUGGCCAGCUUGUCAAGUGGCUGGCUGCCUGGUUUUUCCUGGACGCGCCUCCUUUUCGGCCCGC ........(((.((..-..((((.-((((....(....)(((((((........))))))))))).))))...)).)))((.(((........))).)). ( -32.70) >DroSec_CAF1 66437 97 - 1 GUUCUAUUUCC-UCCU-UUGGCCGGGGCAAUAACAAUUGGCCAGAUUGUCAAGUGGCUGGCUGCCUGGUUGGUCCUGGCCGCGCCC-CCUUUCGGCCCGC ...........-....-..(((((((((........(((((......)))))(((((..(..(((.....))).)..)))))))))-).....))))... ( -36.40) >DroSim_CAF1 66492 98 - 1 GUUCUAUUUCCCGCCU-UUGGCCGGGGCAAUAACAAUUGGCCAGCUUGUCAAGUGGCUGGCUGCCUGGUUGGUCCUGGCCGCGCCC-CUUUUCGGCCCGC ................-..(((((((((.....((..(((((((((........)))))))))..))....)))))))))(((..(-(.....))..))) ( -39.20) >DroEre_CAF1 69727 91 - 1 GUUCUAUAUC-CGCCU-CUGGCCGGGGCAAUAACAAUUGGCCAGCUUGUCAAGUGGCUGGCUGG----UUGGUCCUGGCCGCGCC---CUUUCGGCCCGC ..........-.((..-..(((((((((.....((((..(((((((........)))))))..)----))))))))))))(.(((---.....))).))) ( -41.70) >DroYak_CAF1 69230 93 - 1 GUUCUAUAUCCCGCCU-UUGGUCGGGGCAAUAACAAUUGGCCAGCUUGUCAAGUGGCUGGCUGC----UUGGUCCUGGCCACGCCC--CCUUCGGCCCGC ............((..-.((((((((((.....(((..((((((((........))))))))..----))))))))))))).(((.--.....)))..)) ( -34.70) >DroAna_CAF1 63460 88 - 1 UUGCUGUUGCCCGGCUCUUGGCCAGGCGAAUAACAAUUGGCCUGCUUGGCGAGAACAUGGCUGG----UUGGGCACUGCCACGCCU-C-------CACGG ..((..(((((.(((.....))).)))))........((((.((((..((.((.......)).)----)..))))..)))).))..-.-------..... ( -31.00) >consensus GUUCUAUUUCCCGCCU_UUGGCCGGGGCAAUAACAAUUGGCCAGCUUGUCAAGUGGCUGGCUGC____UUGGUCCUGGCCGCGCCC_CCUUUCGGCCCGC ..................((((((((((..........((((((((........)))))))).........)))))))))).(((........))).... (-25.39 = -26.94 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:51 2006