| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,579,513 – 20,579,625 |
| Length | 112 |
| Max. P | 0.708539 |
| Location | 20,579,513 – 20,579,625 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 96.43 |
| Mean single sequence MFE | -23.14 |
| Consensus MFE | -20.75 |
| Energy contribution | -20.87 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.708539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20579513 112 + 23771897 GACAACGUUUACUUCCUAACUUAGCACCUGGAAUCGGGACACACACUUCUCGUCACUAGUUCAGACCAAAUAAGAUAUUAUUUGUUUAGUAUUUUUGAUUUUUUCGUUGUCU (((((((......((............((((...(((((........)))))...))))............(((((((((......))))))))).))......))))))). ( -21.80) >DroSec_CAF1 24244 111 + 1 GACAACGUUUACUUCCUAACUUAGCACCUGGAAUCGGGACACACACUUCUCGCCACUAGUUCUGACCAAAUAAAAUAUUAUUUGUUUAGUAUUUUUGAUUU-UUCGUUGUCU (((((((.....((((.............)))).(((((........))))).((..(((.((((.(((((((....))))))).)))).)))..))....-..))))))). ( -22.62) >DroSim_CAF1 17773 112 + 1 GACAACGUUUACUUCCUAACUUAGCACCUGGAAUCGGGACACACACUUCUCGCCACUAGUUCAGGCCAAAUCAAAUAUUAUUUGUUUAGUAUUUUUGAUUUUUUCGUUGUCU (((((((...................((((((..(((((........))))).......))))))..(((((((((((((......))))))..)))))))...))))))). ( -25.00) >consensus GACAACGUUUACUUCCUAACUUAGCACCUGGAAUCGGGACACACACUUCUCGCCACUAGUUCAGACCAAAUAAAAUAUUAUUUGUUUAGUAUUUUUGAUUUUUUCGUUGUCU (((((((......((............((((...(((((........)))))...))))............(((((((((......))))))))).))......))))))). (-20.75 = -20.87 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:24 2006