Locus 767

Sequence ID 3L_DroMel_CAF1
Location 2,302,208 – 2,302,313
Length 105
Max. P 0.610936
window1182

overview

Window 2

Location 2,302,208 – 2,302,313
Length 105
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 81.68
Mean single sequence MFE -33.13
Consensus MFE -22.50
Energy contribution -23.45
Covariance contribution 0.95
Combinations/Pair 1.27
Mean z-score -1.57
Structure conservation index 0.68
SVM decision value 0.16
SVM RNA-class probability 0.610936
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2302208 105 - 23771897
UAAGUGAAAUGUUGUGCCAUUUGCAAGUUGAGUGAGUUGGUCUCUCCUGCGCUCUGAGUUUGCUUUAGAUUCAGAUACAGCAAACGC---------ACUGCACGACUUGUGGCG
...((.(...(((((((....(((.....(((((....((.....))..)))))...(((((((.((........)).)))))))))---------)..)))))))...).)). ( -31.90)
>DroSec_CAF1 51378 114 - 1
UAAGUGAAAUGUUGUGCCAUUUGCAAGUUGAGUGAGUUGGUCUCUCCUGCGGUCUGAGUUGGCUUUAGAUUCAGAUACAGCAAACCCUGCAGAUACCCUGCACGACUUGUGGCG
...((.(...(((((((.(((((((.((((((.((.....)).))).(((.(((((((((.......)))))))))...))))))..))))))).....)))))))...).)). ( -34.80)
>DroSim_CAF1 51331 114 - 1
UAAGUGAAAUGUUGUGCCAUUUGCAAGUUGAGUGAGUUGGUCUCUCCUGCGGUCUGAGUUUGCUUUAGAUUCAGAUACAGCAAACCCUGCAGAUAUCCUGCACGACUUGUGGCG
...((.(...(((((((.(((((((.((((((.((.....)).))).(((.(((((((((((...)))))))))))...))))))..))))))).....)))))))...).)). ( -35.30)
>DroEre_CAF1 54383 105 - 1
UAAGUGAAAUGUUGUGCCAUUUGCAAGUUGAGUAAGUUGGCCUCUGCUGCGGUCUGAGUUUAUUUUAGAUUCAGAUACAGCAAUCGC---------CCUGCACGACUUGUGGCG
...............(((....((((((((.(((....(((...(((((..(((((((((((...))))))))))).)))))...))---------).))).))))))))))). ( -36.60)
>DroYak_CAF1 53917 105 - 1
UAAGUGAAAUGUUGUGCCAUUUGCAAGUUGAGUAAGUUGGUCGCUACUGCGUUCUGAGUUUAUUUUAGGUUCAGAUACAGCAAACAC---------CCAGCACGACUUGUGGCG
...((.(...(((((((...((((.......))))((((..(((....))).((((((..((...))..))))))..))))......---------...)))))))...).)). ( -26.70)
>DroAna_CAF1 50564 100 - 1
UAAGUGAAAUGUUGUGUCAUUUGCAAGUCGAGCGAGUUAGUUUUUCGCCCGUCCUGUAUUUACUUU----UUAGAG--GGUCGACUUU--------GUGGCACGACUUGUGGCG
...((.(...((((((((((....((((((((((((.......)))))...((((.((........----.)).))--))))))))).--------))))))))))...).)). ( -33.50)
>consensus
UAAGUGAAAUGUUGUGCCAUUUGCAAGUUGAGUGAGUUGGUCUCUCCUGCGGUCUGAGUUUACUUUAGAUUCAGAUACAGCAAACCC_________CCUGCACGACUUGUGGCG
...............(((....((((((((.(((((.......))).(((.(((((((((((...)))))))))))...))).................)).))))))))))). (-22.50 = -23.45 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:43 2006