Locus 7667

Sequence ID 3L_DroMel_CAF1
Location 20,575,425 – 20,575,538
Length 113
Max. P 0.910128
window12462

overview

Window 2

Location 20,575,425 – 20,575,538
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.39
Mean single sequence MFE -26.64
Consensus MFE -23.62
Energy contribution -24.14
Covariance contribution 0.52
Combinations/Pair 1.06
Mean z-score -1.48
Structure conservation index 0.89
SVM decision value 1.07
SVM RNA-class probability 0.910128
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20575425 113 + 23771897
GUC---GGAGUCUGUUACACUUUCACAGAACUCAAAAUGUCGUAUUUCACGUAUUUUUACGAGCGUUCGCGUAAAUUUAUGCGAAAAAUCAUAAAUAAUCUGGGCAUA-GCUGCCUU---
...---.((((((((.........)))).))))((((((.(((.....)))))))))...((...((((((((....))))))))...))...........(((((..-..))))).--- ( -26.30)
>DroSec_CAF1 20204 113 + 1
GUC---GGAGUCUGUUACACUUUCACAGAACUCAAAAUGUCGUAUUUCACGAAUUUUUACGAGCGUUCGCGUAAAUUUAUGCGAAAAAUCAUAAAUAAUCUGGGCAUA-GCUGCCUU---
...---.((((((((.........)))).))))((((..((((.....))))..))))..((...((((((((....))))))))...))...........(((((..-..))))).--- ( -26.30)
>DroAna_CAF1 41697 120 + 1
GUCUAGAGACUGUGUUACACUUUCACAGAACUCAAAAUGUCGUAUUUCACGCAUUUUUACGAGCGUUCGCGUAAAUUUAUGCGAAAAAUCAUAAAUAACCCGGGCAUAAGCUGCCUUCUA
.....(((.(((((.........)))))..)))((((((.(((.....)))))))))...((...((((((((....))))))))...))...........(((((.....))))).... ( -28.90)
>DroSim_CAF1 13713 113 + 1
GUC---GGAGUCUGUUACACUUUCACAGAACUCAAACUGUCGUAUUUCACGCAUUUUUACGAGCGUUCGCGUAAAUUUAUGCGAAAAAUCAUAAAUAAUCUGGGCAUA-GCUGCCUU---
((.---.((((((((.........)))).))))..))((.(((.....)))))..((((.((...((((((((....))))))))...)).))))......(((((..-..))))).--- ( -26.20)
>DroEre_CAF1 13500 113 + 1
GUC---GGAGUCUGUUACACUUUCACAGAACUCAAAAUGUCGUAUUUCACGCAUUUUUACGAGCGUUCGCGUAAAUUUAUGCGAAAAAUCAUAAAUAACCUGGGCAUA-GCUGCUUU---
...---.((((((((.........)))).))))((((((.(((.....)))))))))...((...((((((((....))))))))...))...........(((((..-..))))).--- ( -25.50)
>consensus
GUC___GGAGUCUGUUACACUUUCACAGAACUCAAAAUGUCGUAUUUCACGCAUUUUUACGAGCGUUCGCGUAAAUUUAUGCGAAAAAUCAUAAAUAAUCUGGGCAUA_GCUGCCUU___
.......((((((((.........)))).))))((((((.(((.....)))))))))...((...((((((((....))))))))...))...........(((((.....))))).... (-23.62 = -24.14 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:14 2006