Locus 7663

Sequence ID 3L_DroMel_CAF1
Location 20,572,670 – 20,572,790
Length 120
Max. P 0.644539
window12454

overview

Window 4

Location 20,572,670 – 20,572,790
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.17
Mean single sequence MFE -45.06
Consensus MFE -32.66
Energy contribution -32.62
Covariance contribution -0.04
Combinations/Pair 1.27
Mean z-score -1.78
Structure conservation index 0.72
SVM decision value 0.23
SVM RNA-class probability 0.644539
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20572670 120 - 23771897
UGAGCAUCUAGAGGGGCAUUCUGCCCUCUUAAGUAGGUUGAGGAUGACUGCAUUGAUUGUACAUCGUCCUCACUGUCCUUUAGAUCGUGCAUUCCGCGACUUAGCCAUCCUGGCGGCUGC
..(((.(((((((((((.....)))).........(((.((((((((.((((.....))))..)))))))))))...)))))))(((((.....)))))....(((.....))).))).. ( -42.20)
>DroSec_CAF1 17583 120 - 1
UGAGCAUCUAGAGGGGCAUUCUGUCCUCUUAAGUAGGUUGAGGAUGACUGCAUUGAUUGCACAUCGUCCUCACUGUCCUUUAGAUCGUGCAUUCCGCGACUUAGCCAUCCUGGCGGCUGC
..(((.(((((((((((.....)))).........(((.((((((((.((((.....))))..)))))))))))...)))))))(((((.....)))))....(((.....))).))).. ( -41.50)
>DroAna_CAF1 39239 120 - 1
UGAGCGUCCAGGGGGGCGUUCUGUCCCCUCAGAUAUGUGGAGCUGGAUUGCAGGGACUGGACAUCGUCCUCACUGUCCUUGAGGUCGUGCAUCCCACGGCUGAGCCACCCAGGUGGAGGC
.((((((((....))))))))....(((((((...(((((.((..(((..(((((((.((((...)))).....)))))))..)))..))...))))).)))))((((....)))).)). ( -51.90)
>DroSim_CAF1 11080 120 - 1
UGUGCAUCUAGAGGGGCAUUCUGCCCUCUCAAGUAGGUUGAGGAUGACUGCAUUGAUUGUACAUCGUCCUCACUGUCCUUCAGAUCGUGCAUUCCGCGACUUAGCCAUCCUGGCGGCUGC
((..(((((.((((((((.(((((........))))).(((((((((.((((.....))))..))))))))).)))))))))))).)..))..........(((((........))))). ( -43.20)
>DroEre_CAF1 10811 120 - 1
UGGGCAUCUAGAGGGGCAUUCUGUCCCCUUAAGUAGGUCGAGGAUGACUGCAUUGAUUGUACAUCGUCCUCGCUGUCCUUAAGAUCGUGCAUGCCGCGACUCAGCCAUCCUGGCGGCUGC
..(((((...(((((((.....)))))((((((..((.(((((((((.((((.....))))..)))))))))))...)))))).))....)))))......(((((........))))). ( -46.50)
>consensus
UGAGCAUCUAGAGGGGCAUUCUGUCCUCUUAAGUAGGUUGAGGAUGACUGCAUUGAUUGUACAUCGUCCUCACUGUCCUUUAGAUCGUGCAUUCCGCGACUUAGCCAUCCUGGCGGCUGC
...(((.((.(((((((.....))))(((.(((..(((.((((((((.((((.....))))..)))))))))))...))).)))(((((.....)))))))).(((.....))))).))) (-32.66 = -32.62 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:06 2006