Locus 7659

Sequence ID 3L_DroMel_CAF1
Location 20,569,671 – 20,569,786
Length 115
Max. P 0.846132
window12449

overview

Window 9

Location 20,569,671 – 20,569,786
Length 115
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 97.09
Mean single sequence MFE -36.13
Consensus MFE -35.29
Energy contribution -35.07
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.88
Structure conservation index 0.98
SVM decision value 0.77
SVM RNA-class probability 0.846132
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20569671 115 + 23771897
UGUUUUGUGCACUAAAACCAUUUUUUCCAGUAUGCUCGCUGGGUGUCUGUCUUCUGAGUCUGGGCCUUGCUCUCCACUCGACUCGAGUUGAGUCGCUUGUGCUCAGCACUCGGUU
.((((((.....)))))).......((((((......))))))..........(((((((((((((..((.(((.(((((...))))).)))..))..).)))))).)))))).. ( -37.20)
>DroSec_CAF1 14619 114 + 1
-GUUUUGUGCACUGAAACUAUUUUUUCCAGUAUGCUCCCUGGGUGUCUGUCUUCUGAGUCUGGGCCUUGCUCUCCACUCGACUCGAGUUGAGUCGCCUGUGCUCAGCACUCGGUU
-(((((.......))))).........(((.(((((.....))))))))....(((((((((((((..((.(((.(((((...))))).)))..))..).)))))).)))))).. ( -35.00)
>DroSim_CAF1 8090 114 + 1
-GUUUUGUGCACUGAAACUAUUUUUUCCAGUAUGCUCGCUGGGUGUCUGUCUUCUGAGUCUGGGCCUUGCUCUCCACUCGACUCGAGUUGAGUCGCCUGUGCUCAGCACUCGGUU
-(((((.......))))).......((((((......))))))..........(((((((((((((..((.(((.(((((...))))).)))..))..).)))))).)))))).. ( -36.20)
>consensus
_GUUUUGUGCACUGAAACUAUUUUUUCCAGUAUGCUCGCUGGGUGUCUGUCUUCUGAGUCUGGGCCUUGCUCUCCACUCGACUCGAGUUGAGUCGCCUGUGCUCAGCACUCGGUU
.((((((.....)))))).......(((((........)))))..........(((((((((((((..((.(((.(((((...))))).)))..))..).)))))).)))))).. (-35.29 = -35.07 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:01 2006