| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,568,420 – 20,568,537 |
| Length | 117 |
| Max. P | 0.638994 |
| Location | 20,568,420 – 20,568,537 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 87.46 |
| Mean single sequence MFE | -20.68 |
| Consensus MFE | -16.23 |
| Energy contribution | -15.79 |
| Covariance contribution | -0.43 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638994 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20568420 117 - 23771897 AAGUGCAUAUUAAUCAGUUUGGUCUUCGAGCCAAACAAUUUAUUUAAUCCCGGUAAUUUAUAUACUGAUCUUUUACUCUCAGAAAAUAAUUACUGUAUUGAUUUAAAGGAGCUCCGU .(((.......((((((((((((......)))))))..............((((((((......((((..........)))).....))))))))...))))).......))).... ( -21.14) >DroSec_CAF1 13200 116 - 1 CACUCCAUAUUAAUAAGUUUGGUCUUCAAGCCAAACAGUUUACUUAAUCCCACUAAUUUAUA-ACUGAUCUUUAUCUCUCAGAAAAUACUUACUGUAUUGAUUUUAAGGAGCUCCUA ..((((..........(((((((......))))))).........((((.............-.((((..........))))..(((((.....)))))))))....))))...... ( -19.40) >DroSim_CAF1 6856 117 - 1 CACUGCAUAUUAAUCAGUUUGGCCUUCAAGCUAAACAAUUUAUUUAAUCCCAGUAAUUUAUAUACUGAUCUUUAUCUCUCAGAAAAUACUUACUGGAUUGAUUUUAAGGAACUCUAC ..((....(((((((.(((((((......)))))))..............((((((..(((...((((..........))))...))).)))))))))))))....))......... ( -21.50) >consensus CACUGCAUAUUAAUCAGUUUGGUCUUCAAGCCAAACAAUUUAUUUAAUCCCAGUAAUUUAUAUACUGAUCUUUAUCUCUCAGAAAAUACUUACUGUAUUGAUUUUAAGGAGCUCCAA ........(((((((.(((((((......)))))))..............((((((........((((..........)))).......))))))))))))).....((....)).. (-16.23 = -15.79 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:52 2006