| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,567,920 – 20,568,036 |
| Length | 116 |
| Max. P | 0.506769 |
| Location | 20,567,920 – 20,568,036 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.86 |
| Mean single sequence MFE | -28.04 |
| Consensus MFE | -19.68 |
| Energy contribution | -19.88 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20567920 116 + 23771897 AGUGCAGCAAACGCAAUUCCCAACUAUUUGUUUUGUAUCUCAA--AAAUUCUACGGCGUUUGAUUUCGAGAGCCUAACAAUUAAGUUCUCGAAAA-GACAGC-CAACCUGUUCGGAAUUU ......((....))((((((.(((......(((((.....)))--)).......(((((((..((((((((((.((.....)).)))))))))))-))).))-).....))).)))))). ( -28.60) >DroSec_CAF1 12702 115 + 1 AGUGCAGCAAACGCAAUUCCCAACUAUUU-UUUUGUAUCUCAA--AAAUUCUACGGCGUUCGGUUUCGAGAGCCUAACAAUUAAGUUCUCGAAAA-GACAGC-CAACCUGUUCGGAAUUU ......((....))((((((.(((....(-(((((.....)))--)))......(((..((..((((((((((.((.....)).)))))))))).-))..))-).....))).)))))). ( -29.90) >DroAna_CAF1 33868 120 + 1 AGUGCAGCAACCGCAAUGCCCAACUAUUCGGUUUGUCUUUCAAAUAAAUUCUACGCUGUAGUGUUUCGAGAGCACAACAAUUAUAUUCUCGAAGAGGACAGUUCGACCUGUUCGGAAUUA ..((((((.((((.((((......))))))))(((.....)))...........))))))((((((...)))))).........((((.((((.(((.(.....).))).)))))))).. ( -27.30) >DroSim_CAF1 6356 116 + 1 AGUGCAGCAAACGCAAUUCCCAACUAUUUGUUUCGUAUCUCAA--AAAUUCUACGGCGUUCGGUUUCGAGAGCCUAACAAUUAAGUUCUCGAAAA-GACAGC-CAACCUGUUCGGAAUUU ......((....))((((((.(((..((((..........)))--)........(((..((..((((((((((.((.....)).)))))))))).-))..))-).....))).)))))). ( -27.50) >DroEre_CAF1 6265 115 + 1 AGUGCAGCAGACGCAAUUCCCAACUAUUUGCUUUGUAUC-CAA--AAAUUCUACGCCGUAUUGCUUCGAGAGCCUAACAAUUAAGUUCUCGAAGA-GACAGC-CAACCUGUUCGGAAUUU ......(((((.((((...........)))))))))...-...--(((((((...........((((((((((.((.....)).)))))))))).-(((((.-....))))).))))))) ( -26.90) >consensus AGUGCAGCAAACGCAAUUCCCAACUAUUUGUUUUGUAUCUCAA__AAAUUCUACGGCGUUCGGUUUCGAGAGCCUAACAAUUAAGUUCUCGAAAA_GACAGC_CAACCUGUUCGGAAUUU ......((....))((((((...........................................((((((((((.((.....)).))))))))))..(((((......))))).)))))). (-19.68 = -19.88 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:46 2006