Locus 7646

Sequence ID 3L_DroMel_CAF1
Location 20,560,555 – 20,560,651
Length 96
Max. P 0.776894
window12422

overview

Window 2

Location 20,560,555 – 20,560,651
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 96.53
Mean single sequence MFE -36.61
Consensus MFE -33.09
Energy contribution -33.54
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -2.11
Structure conservation index 0.90
SVM decision value 0.55
SVM RNA-class probability 0.776894
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20560555 96 + 23771897
UCCGCAUUUCCCAUGGCCGCGUUAUGUGAGAAAGUAGCCGGCCAACGCCAACAGAUGGGCAAUAAAAUGGCCAGGCCCACAAGGUGCAUCUGGGAG
........(((((((((((.(((((........))))))))))).((((....(.(((((..............))))))..))))....))))). ( -32.94)
>DroSim_CAF1 103938 96 + 1
UCCGCAUUUCCCAUGGCCGGGUUAUGUGAGAAAGUAGCCGGCCUGCGCCAACAGAUGGGCAAUAAAAUGGCCAGGCCCACAAGGCGCAUCUGGGAG
........(((((.((((((.((((........))))))))))((((((....(.(((((..............))))))..))))))..))))). ( -38.14)
>DroEre_CAF1 105097 95 + 1
UCCGCAUUUCCCAUGGC-GGGUUAUGUGAGAAAGUAGCCGGCCAGCGCCAACAGAUGGGCAAUAAAAUGGCCAGGCCCACAAGGCGCAUCUGGGAG
........(((((((((-.((((((........)))))).))))(((((....(.(((((..............))))))..)))))...))))). ( -38.74)
>consensus
UCCGCAUUUCCCAUGGCCGGGUUAUGUGAGAAAGUAGCCGGCCAGCGCCAACAGAUGGGCAAUAAAAUGGCCAGGCCCACAAGGCGCAUCUGGGAG
........(((((.(((((.(((((........)))))))))).(((((....(.(((((..............))))))..)))))...))))). (-33.09 = -33.54 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:35 2006