Locus 7631

Sequence ID 3L_DroMel_CAF1
Location 20,542,558 – 20,542,657
Length 99
Max. P 0.817292
window12399

overview

Window 9

Location 20,542,558 – 20,542,657
Length 99
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 76.62
Mean single sequence MFE -27.05
Consensus MFE -13.34
Energy contribution -13.45
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -2.08
Structure conservation index 0.49
SVM decision value 0.67
SVM RNA-class probability 0.817292
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20542558 99 + 23771897
----AGUUGCUGUUGCCUAGUUGUUGGCUGCCAGCCACACGUUCACUGAUCGCUGUGGCAUUUGUUACAAUUUUAAAUGUUAGCUCAGGCAAAA------GCG-AGGCAA
----..(((((.((((((.(..((((((.....((((((((.((...)).)).))))))(((((.........))))))))))).))))))).)------)))-)..... ( -30.20)
>DroPse_CAF1 102092 81 + 1
-----------------------UUGGCUGCCAGCCACACGUUCACCGAUCGCUGUGGCAUUUGUUACAAUUUUAAAUGUUAGCAAAAGCAAAG------CCAAAAGCAA
-----------------------((((((((..((((((((.((...)).)).)))))).(((((((((........)).))))))).))..))------))))...... ( -24.20)
>DroSec_CAF1 84591 99 + 1
----AGUUGCUGUUGCCUAGUUGUUGGCUGCCAGCCACACGUUCACUGAUCACUGUGGCAUUUGUUACAAUUUUAAAUGUUAGCUCAGGCAAAA------GCG-AGGCAA
----..(((((.(((((((((((.((((.....)))).(((((....(((...((((((....)))))))))...)))))))))).)))))).)------)))-)..... ( -28.40)
>DroEre_CAF1 87130 99 + 1
----AGUUGCUGUUGCCUAGUUGUUGGCUGCCAGCCACACGUUCACUGAUCGCUGUGGCAUUUGUUACAAUUUUAAAUGUUAGCUCAGGCAAAA------GCG-AGGCAA
----..(((((.((((((.(..((((((.....((((((((.((...)).)).))))))(((((.........))))))))))).))))))).)------)))-)..... ( -30.20)
>DroMoj_CAF1 95822 87 + 1
ACUUGGCUG--------------UUGGCUUGGAGCCACACGUUCGCCAAGCUCUGUGGCAUUUGUUACAAUUUUAAAUGUUAGCUUAGGCAAAA-------CG-AGACA-
.((((((((--------------(.(((.....)))))).))..((((((((....((((((((.........))))))))))))).)))....-------))-))...- ( -24.40)
>DroPer_CAF1 104012 87 + 1
-----------------------UUGGCUGCCAGCCACACGUUCACCGAUCGCUGUGGCAUUUGUUACAAUUUUAAAUGUUAGCAAAAGCAAAGCCAAAGCCAAAAGCAA
-----------------------((((((((..((((((((.((...)).)).)))))).(((((((((........)).))))))).))..)))))).((.....)).. ( -24.90)
>consensus
____AGUUG______________UUGGCUGCCAGCCACACGUUCACCGAUCGCUGUGGCAUUUGUUACAAUUUUAAAUGUUAGCUCAGGCAAAA______GCG_AGGCAA
..........................(((....((((((((.........)).))))))....((((((........)).))))...))).................... (-13.34 = -13.45 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:07 2006