| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,533,550 – 20,533,656 |
| Length | 106 |
| Max. P | 0.770003 |
| Location | 20,533,550 – 20,533,656 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 87.03 |
| Mean single sequence MFE | -46.40 |
| Consensus MFE | -38.14 |
| Energy contribution | -39.03 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.770003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20533550 106 + 23771897 CGGAACUUCCACCAC---CCGCCUGCUGGCUAUUGUGGUGCGCCGCCAUCGCAGCCACCGCCUGCUGCUGCUGCUCCUGCAGCAGACAGUGGAUCUUGAACCAGUUGGA .((.....)).....---...((.(((((.....((((((.((.((....)).))))))))(..((((((((((....))))))).)))..)........))))).)). ( -46.30) >DroVir_CAF1 81961 105 + 1 -AUUGCCUCCGGCGC---CAGCCUGCUGACUGUUGUGGUGUGCUGCCAUCGCCGCGACCGCCUGCUGCUGCUGCUCCUGCAGCAGACAGUGUAUCUUGAACCAGUUGGA -......(((((((.---(((....)))...(((((((((((....)).))))))))))))).(((((((((((....))))))).))))................))) ( -42.20) >DroSim_CAF1 75753 106 + 1 CGGCACUUCCGCCAC---CCGCCUGCUGGCUAUUGUGGUGCGCCGCCAUCGCAGCCACCGCCUGCUGCUGCUGCUCUUGCAGCAGACAGUGGAUCUUGAACCAGUUAGA .(((......)))..---....(((((((.....((((((.((.((....)).))))))))(..((((((((((....))))))).)))..)........)))).))). ( -46.50) >DroEre_CAF1 78245 106 + 1 CGGCACCUCCGCCUC---CCGCCUGCUGGCUAUUGUGGUGCGCCGCCAUCGCAGCCACCGCCUGCUGCUGCUGCUCCUGCAGCAGACAGUGGAUCUUGAACCAGUUGGA .(((......)))..---...((.(((((.....((((((.((.((....)).))))))))(..((((((((((....))))))).)))..)........))))).)). ( -48.80) >DroMoj_CAF1 84635 105 + 1 -GUUGCCCGCCGCGC---CCGCCUGCUGGCUGUUGUGGUGUGCCGCCAUGGCAGCCACCGCCUGCUGCUGCUGCUCCUGCAGCAGGCAGUGGAUCUUGAACCAAUUGGA -........((((..---......(.(((((((..(((((...)))))..))))))).)(((((((((..........))))))))).))))........((....)). ( -48.50) >DroAna_CAF1 73361 109 + 1 CGGGAACUCCACCUCCUCCACCCUGCUGGCUGUUGUGGUGCGCCGCCAUCGCUGCCACCGCCUGCUGCUGCUGCUCCUGGAGGAGGCAGUGGAUCUUGAACCAGUUGGA (((((..(((((((((((((....((.(((.((.((((((.((.((....)).))))))))..)).)))...))...)))))))))...)))))))))..((....)). ( -46.10) >consensus CGGCACCUCCGCCAC___CCGCCUGCUGGCUAUUGUGGUGCGCCGCCAUCGCAGCCACCGCCUGCUGCUGCUGCUCCUGCAGCAGACAGUGGAUCUUGAACCAGUUGGA .((........))........((.(((((.....((((((.((.((....)).))))))))(((((((((((((....))))))).))))))........))))).)). (-38.14 = -39.03 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:04 2006