Locus 7627

Sequence ID 3L_DroMel_CAF1
Location 20,528,503 – 20,528,623
Length 120
Max. P 0.990986
window12395

overview

Window 5

Location 20,528,503 – 20,528,623
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.47
Mean single sequence MFE -41.72
Consensus MFE -37.92
Energy contribution -39.55
Covariance contribution 1.63
Combinations/Pair 1.06
Mean z-score -2.50
Structure conservation index 0.91
SVM decision value 2.24
SVM RNA-class probability 0.990986
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20528503 120 + 23771897
CACAUCCACAUCCACAUCCAUAUUGCCUCACUCCGCGGGUAUCUAACAUAGUACGAUGUUGUGGCAUCCAUCUGGGAGUGUGGCAUCCAGCGCGGUGGAGACAUUUAUCGCGCGUUGGUG
........((((.((........((((.((((((.(((((((........))))(((((....)))))...))))))))).))))....((((((((((....)))))))))))).)))) ( -45.40)
>DroSec_CAF1 70717 108 + 1
CA------------CAUCCAUAUUGCCACACUCCACGGGUAUCUAACAUAGUACGAUGUUGUGGCAUCCAUCUGGGAGUGUGGCAUCCAGCGCAGUGGAGACAUUUAUCGCGCGUUGGUG
..------------.........(((((((((((.(((((((........))))(((((....)))))...)))))))))))))).(((((((((((....))))......))))))).. ( -44.70)
>DroSim_CAF1 70820 114 + 1
CACAU------CCACAUCCAUAUUGCCACACUCCACGGGUAUCUAACAUAGUACGAUGUUGUGGCAUCCAUCUGGGAGUGUGGCAUCCAGCGCAGUGGAGACAUUUAUCGCGCGUUGGUG
..(((------(.((........(((((((((((.(((((((........))))(((((....)))))...))))))))))))))....((((((((....))))....)))))).)))) ( -45.60)
>DroEre_CAF1 73299 103 + 1
CAGAU------CCACAUCCAUAUCGCCAUGCUCCACGGGUAUCU-----GGUACGAUGUUGUGGCAUCCAUCUGGGAGU------UCCAGCGCACUGGAGACAUUUAUCGCGCGUUGGUG
(((((------(((((...(((((((((((((.....))))..)-----))..))))))))))).....))))).....------.(((((((.(((....))......).))))))).. ( -31.20)
>consensus
CACAU______CCACAUCCAUAUUGCCACACUCCACGGGUAUCUAACAUAGUACGAUGUUGUGGCAUCCAUCUGGGAGUGUGGCAUCCAGCGCAGUGGAGACAUUUAUCGCGCGUUGGUG
.......................(((((((((((.(((((((........))))(((((....)))))...)))))))))))))).(((((((((((....))))......))))))).. (-37.92 = -39.55 +   1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:03 2006