| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,498,061 – 20,498,153 |
| Length | 92 |
| Max. P | 0.925594 |
| Location | 20,498,061 – 20,498,153 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 74.31 |
| Mean single sequence MFE | -24.75 |
| Consensus MFE | -10.94 |
| Energy contribution | -10.99 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.44 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20498061 92 - 23771897 --AGCAGCAACU-----CGCAUUUGAC-GACGGCAACAACAAAGCGGCAGCAACAACUAAAUGCAAUCAACGUGUGUUUGCAAUUGUUGUUGCAGUUG--AC------------- --....((....-----.))......(-(((.((((((((((.((....))..........(((((.((.....)).))))).)))))))))).))))--..------------- ( -26.90) >DroSec_CAF1 40669 92 - 1 --AGCAGCAACU-----CGCAUUUGAC-GACGGCAACAACAAAGCGGCAGCAACAACUAAAUGCAAUCAACAUGUGUUUGCAAUUGUUGUUGCAGUUG--AC------------- --....((....-----.))......(-(((.((((((((((.((....))..........(((((.((.....)).))))).)))))))))).))))--..------------- ( -26.90) >DroSim_CAF1 40599 88 - 1 GCAGCAGCAACU-----CGCAUUUGAC-GACGGCAACAACAAAGCGGCAGCA--CACUAAAUGCAAUCAACAUGUGU-UGCAAUG--UGUUGCAGU-G--AC------------- ((((((.((...-----(((.((((..-...(....)..)))))))((((((--((................)))))-)))..))--))))))...-.--..------------- ( -23.69) >DroEre_CAF1 42878 90 - 1 --CGCAGCAACU-----CGCAUUUGAC-GACGGCAACAACAAAGCGGCAGCAACAACCAAAUGCAAUCAACAUGUGUUUGCAAUUGCUGCUGCAGUUG----------------- --.((.......-----.))......(-((((....)......((((((((((....((((((((.......))))))))...)))))))))).))))----------------- ( -28.70) >DroMoj_CAF1 49278 94 - 1 --AACAACAACUGUUGCUGCAGCUGUCAGACGGCAACAACAAAA--GCAGCAAAAAUAAAAUGCAAUCAACAUGUGUAUUUUUUUUACGUUUUAGCUU----------------- --.........(((((((((........).))))))))....((--(((((..(((.((((((((.........)))))))).)))..)))...))))----------------- ( -16.90) >DroAna_CAF1 38772 97 - 1 --AACAGCAACU-----UGCAAUUGAC-GACGGCAACAACAAAGCUGCAACA----------GCAAUCAACAUGUGUUUGCAAUUGUUGCUUUUGUUGUGACCGCUUUUCCAUUU --....((....-----.))....((.-(((((..(((((((((..((((((----------((((.((.....)).))))...)))))))))))))))..))).)).))..... ( -25.40) >consensus __AGCAGCAACU_____CGCAUUUGAC_GACGGCAACAACAAAGCGGCAGCAACAACUAAAUGCAAUCAACAUGUGUUUGCAAUUGUUGUUGCAGUUG__AC_____________ ...((((((.........((((.((......(....).........(((............)))......)).))))..........))))))...................... (-10.94 = -10.99 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:47 2006