| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,484,068 – 20,484,158 |
| Length | 90 |
| Max. P | 0.994836 |
| Location | 20,484,068 – 20,484,158 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 63.81 |
| Mean single sequence MFE | -13.64 |
| Consensus MFE | -8.20 |
| Energy contribution | -8.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.60 |
| SVM decision value | 2.52 |
| SVM RNA-class probability | 0.994836 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20484068 90 + 23771897 ------------------UAUGAUAGCUAAAAC--UAACCUAUCUAACUAGUA--CAGAAUUAAAAACUCAAAAUUCGCAAUCGAUUUCCCAGCAAAGCAAUGGGAAAAGAG ------------------..((((.((....((--((...........)))).--..(((((..........))))))).)))).(((((((.........))))))).... ( -14.10) >DroSec_CAF1 26713 90 + 1 ------------------UAAAAUUGGAAAAAA---CACA-GUUCAACCACUUUUUCUCAUUAAAAACUGAAACUCCGCAAUCGAUUUCCCAGCAACUCAAUGGGAAAACAG ------------------.......(((.....---..((-(((.....................)))))....)))......(.(((((((.........))))))).).. ( -11.30) >DroEre_CAF1 28496 110 + 1 CUACCUAGUACACAAUAUUAAAAUUAGAAAGAAACCCACA-UUUCAACCAUGUUUUCCCAUUA-AAACUCAAAUUCCGCAAACGAUUUCCCAGCAAUGCCAUGGGAAAACAG ....(((((.............)))))...((((......-)))).....(((((((((((..-............((....))......((....))..))))))))))). ( -15.52) >consensus __________________UAAAAUUGGAAAAAA___CACA_AUUCAACCACUUUUUCCCAUUAAAAACUCAAAAUCCGCAAUCGAUUUCCCAGCAAAGCAAUGGGAAAACAG .....................................................................................(((((((.........))))))).... ( -8.20 = -8.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:34 2006