Locus 761

Sequence ID 3L_DroMel_CAF1
Location 2,263,172 – 2,263,268
Length 96
Max. P 0.569991
window1175

overview

Window 5

Location 2,263,172 – 2,263,268
Length 96
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 82.99
Mean single sequence MFE -26.70
Consensus MFE -16.17
Energy contribution -16.30
Covariance contribution 0.13
Combinations/Pair 1.20
Mean z-score -1.87
Structure conservation index 0.61
SVM decision value 0.07
SVM RNA-class probability 0.569991
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2263172 96 - 23771897
UAGUUGAUUUAUCCUGGCGGCAGAGGCUUUAAAGUGGCUUUAGACAUCUCUGAAAUGCCCGGAAAGCCCAAUGAAAAUGUUAUUUGGCCAGCUUAA
.(((((.....(((.((((.((((((.(((((((...)))))))..))))))...)))).)))..(((.(((((.....))))).))))))))... ( -30.20)
>DroSec_CAF1 12877 96 - 1
UAGUUGAUUUAUCCUGGCGGCGGAGGCUUUAAAGUGGCUUUAGACAUCUCUGAAAUGCCCGGAAAGCCCAAUGAAAAUGUUAUUUGGCCAGCUUAA
.(((((.....(((.((((.((((((.(((((((...)))))))..))))))...)))).)))..(((.(((((.....))))).))))))))... ( -29.50)
>DroSim_CAF1 13084 96 - 1
UAGUUGAUUUAUCCUGGCGGCGGAGGCUUUAAAGUGGCUUUAGACAUCUCCGAAAUGCCCGGAAAGCCCAAUGAAAAUGUUAUUUGGCCAGCUUAA
.(((((.....(((.((((.((((((.(((((((...)))))))..))))))...)))).)))..(((.(((((.....))))).))))))))... ( -31.70)
>DroAna_CAF1 13474 85 - 1
------AUUUAUCCGGGUG---AGAGCUUUAAA-UGGCUUUAGACAUCACUGAACUGUCCGCAGA-CUUGAUGAAAAUUAUAAAAGGCAAGCUUGA
------.......(((((.---((((((.....-.))))))...(((((.....(((....))).-..))))).................))))). ( -15.40)
>consensus
UAGUUGAUUUAUCCUGGCGGCGGAGGCUUUAAAGUGGCUUUAGACAUCUCUGAAAUGCCCGGAAAGCCCAAUGAAAAUGUUAUUUGGCCAGCUUAA
........(((..(((((......((((((...(.((((((((......)))))..))))..))))))..((....))........)))))..))) (-16.17 = -16.30 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:36 2006