Locus 7596

Sequence ID 3L_DroMel_CAF1
Location 20,438,482 – 20,438,602
Length 120
Max. P 0.811449
window12342

overview

Window 2

Location 20,438,482 – 20,438,602
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.50
Mean single sequence MFE -36.40
Consensus MFE -27.64
Energy contribution -28.76
Covariance contribution 1.12
Combinations/Pair 1.09
Mean z-score -1.95
Structure conservation index 0.76
SVM decision value 0.65
SVM RNA-class probability 0.811449
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20438482 120 + 23771897
GCCAGUUUUGGGGCAGGAAUAGCCUUUUCUCCAUCGUUGGGGAAUUACUUGAUGAAAUCGUACGGGUCCGCAUCAGUUAUUCUGAUAGCCACCAUCACUGGGAUGAUCAAUAUCUUGUUU
.(((((..((((((.((((((((...(((((((....))))))).....(((((..(((.....)))...)))))))))))))....))).)))..)))))................... ( -38.80)
>DroSec_CAF1 48185 120 + 1
GCCAGUUUUGGGGCUGGAAUAGCCUUUUCGCCAUCGUUGGGGAAUUAUUUGAUGAAAUCGUAUGGGUCUGCAUCCGUUAUUUUGAUAGCCACCAUCACUGGCAUGAUGAAUAUCUUGUUU
((((((..(((((((((((((((...(((.(((....))).)))......((((..(((.....)))...)))).)))))))...))))).)))..)))))).................. ( -37.40)
>DroSim_CAF1 49924 120 + 1
GCCAGUUUUGGGGCUGGAAUAGCAUUUUCGCCAUCGUUGGGGAAUUAUUUGAUGAAAUCGUACGGGUCUGCAUCAGUUAUUUUGAUAGCCACCAUCACUGGCAUGAUGAAUAUCUUGUUU
((((((..(((((((((((((((...(((.(((....))).))).....(((((..(((.....)))...))))))))))))...))))).)))..)))))).................. ( -40.00)
>DroEre_CAF1 43192 120 + 1
GCCAGUUACGGCGCUGGAAUAGCUUUUUCGCCAUCGUUGGGGAACUAUUUGAUGAAAUUGUACGGGUCUGGAUCAGUUGUUUUGAUUGCUGCCAUCACUGGCUUGAUCAAUAUCUUGUUU
((((((...(((((.(((((((((..((((((.((((..((......))..)))).........)))..)))..)))))))))....)).)))...)))))).................. ( -29.90)
>DroYak_CAF1 68113 120 + 1
GCCAGUUUUGGUGCUGGAAUAGCUUUUUCCCCAUCGUUGGGGAACUAUUUGAUGAAAUCGUUCGGGUCCGGAUCAGUUAUUUUGAUUGCUACCAUCACUGGGUUGAUCAAUAUCUUGUUU
.(((((..((((((.(((((((((..(((((((....)))))))...............(((((....))))).)))))))))....)).))))..)))))................... ( -35.90)
>consensus
GCCAGUUUUGGGGCUGGAAUAGCCUUUUCGCCAUCGUUGGGGAAUUAUUUGAUGAAAUCGUACGGGUCUGCAUCAGUUAUUUUGAUAGCCACCAUCACUGGCAUGAUCAAUAUCUUGUUU
((((((..((((((.((((((((...(((.(((....))).))).....(((((..(((.....)))...)))))))))))))....))).)))..)))))).................. (-27.64 = -28.76 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:11 2006