| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,425,876 – 20,425,987 |
| Length | 111 |
| Max. P | 0.997576 |
| Location | 20,425,876 – 20,425,987 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 71.81 |
| Mean single sequence MFE | -22.79 |
| Consensus MFE | -15.01 |
| Energy contribution | -16.73 |
| Covariance contribution | 1.73 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.66 |
| SVM decision value | 2.89 |
| SVM RNA-class probability | 0.997576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20425876 111 + 23771897 --UAUUAGUAAGUAGUAGGCUAUAAGUUAAAUUGCAUUGCACUCGGCUAAAUUUUCCGUACUAAUUGUGUGUUCUAUAAAAAUCCAGCUUGUAUCUUACUGCUUUUUAGCCCA --..((((.((((((((((.((((((((..(((.....((((.(((.........))).((.....))))))........)))..)))))))).)))))))))).)))).... ( -23.32) >DroSim_CAF1 37065 91 + 1 --AAUUAGUAAGUAGUAGGAUAUUAGUUAA--------------------AUAUUCAGUACUUUUUGGGUGUUCUUUAAAAACCCAACUUGUAUCUUAUUGCUUUUUAGUCCA --.(((((.((((((((((((((.(((...--------------------...............(((((...........)))))))).)))))))))))))).)))))... ( -22.56) >DroYak_CAF1 53447 112 + 1 UCAAUUAGUUCGUAGAAGGAUAUGAGCUUAAUUGUAUUGCACUCUGCUGUUUUUUCCGUACUAGUUGUGUGUUCUAUAAAAA-CUAACUUGUAUCUUACUGCUUUUUAGCCUG ...........((((.((((((..((.(((.(((((..((((.(.(((((.........)).))).).))))..)))))...-.)))))..)))))).))))........... ( -22.50) >consensus __AAUUAGUAAGUAGUAGGAUAUAAGUUAAAUUG_AUUGCACUC_GCU__AUUUUCCGUACUAAUUGUGUGUUCUAUAAAAA_CCAACUUGUAUCUUACUGCUUUUUAGCCCA ....((((.(((((((((((((((((((..........((.....))...........(((.......)))..............))))))))))))))))))).)))).... (-15.01 = -16.73 + 1.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:04 2006