Locus 7583

Sequence ID 3L_DroMel_CAF1
Location 20,381,044 – 20,381,197
Length 153
Max. P 0.678156
window12320 window12321

overview

Window 0

Location 20,381,044 – 20,381,144
Length 100
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 91.17
Mean single sequence MFE -33.92
Consensus MFE -25.71
Energy contribution -26.77
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -1.88
Structure conservation index 0.76
SVM decision value 0.30
SVM RNA-class probability 0.678156
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20381044 100 - 23771897
CGGAGUUAUUAGUCGAAUGGCCAGUGAUUUGCGUGAGUACGGCUUGUUAAGGGCCCAAAAUUAGCUAAUUGGGCUCUUUAGUGAGUUGCCGAUGCCACUG
..((((((((.(((....))).))))))))..(((.((((((((..((((((((((((..........)))))).))))))..)...)))).)))))).. ( -33.50)
>DroSec_CAF1 9291 100 - 1
CGGAGUUAUUAGUCGUAUGCCCAGUGAUUUGCGUGAGUGCGGCUUGUUAAGGGCCCAAAAUUAGCUAAUUGGGCUCUUUAGUGAGUUGCCGCUGGCACUG
.................((((.((((....((....))((((((..((((((((((((..........)))))).))))))..))))))))))))))... ( -37.70)
>DroSim_CAF1 9473 100 - 1
CGGAGUUAUUAGUCGUAUGCCCAGUGAUUUGCGUGAGUGCGGCUUGUUAAGGGCCCAAAAUUAGCUAAUUGGGCUCUUUAGUGAGUUGCCGCUGCCACAG
.((...(((.....)))..))(((((....((....))((((((..((((((((((((..........)))))).))))))..)))))))))))...... ( -33.50)
>DroEre_CAF1 9165 99 - 1
CGCAGUUCCUAGUCGCAAGCCCAGUAAUUUGCGUGAGUACGGCUUGUUAAGGGC-CAAAAUUAGCUAAUUGGGCUCUUUAGAGAGUCGACUGUGCCACUG
..((((..((((((((..(((((((....(((....))).(((((.....))))-)...........)))))))(((....)))).)))))).)..)))) ( -31.00)
>consensus
CGGAGUUAUUAGUCGUAUGCCCAGUGAUUUGCGUGAGUACGGCUUGUUAAGGGCCCAAAAUUAGCUAAUUGGGCUCUUUAGUGAGUUGCCGCUGCCACUG
.....................(((((....((....))((((((..((((((((((((..........)))))).))))))..))))))......))))) (-25.71 = -26.77 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 20,381,104 – 20,381,197
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 87.46
Mean single sequence MFE -28.87
Consensus MFE -22.47
Energy contribution -21.97
Covariance contribution -0.50
Combinations/Pair 1.22
Mean z-score -1.56
Structure conservation index 0.78
SVM decision value 0.22
SVM RNA-class probability 0.639788
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20381104 93 - 23771897
GUGGGAUACUUAUGUGGGUUUUACUCGGUUGGCUAUGCCAACUGUUGCGUCAUCGGAGUUAUUAGUCGAAUGGCCAGUGAUUUGCGUGAGUAC
......((((((((..((((.....((((((((...))))))))(((.(((((..((.(....).))..)))))))).))))..)))))))). ( -30.10)
>DroSec_CAF1 9351 86 - 1
GUGGGAUACUUAUGUGGCUUUUACUCGGUUG-------CAACUGUUGCGUCAUCGGAGUUAUUAGUCGUAUGCCCAGUGAUUUGCGUGAGUGC
......((((((((..(...(((((.(((((-------(.((((..((.((....))))...)))).))).))).))))).)..)))))))). ( -23.70)
>DroSim_CAF1 9533 93 - 1
GUGGGAUACUUAUGUGGGUUUUACUCGGUUGGCCAAGCCAACUGUUGCGUCAUCGGAGUUAUUAGUCGUAUGCCCAGUGAUUUGCGUGAGUGC
......((((((((..(........((((((((...))))))))....(((((.((.((............)))).))))))..)))))))). ( -26.40)
>DroEre_CAF1 9224 93 - 1
GUGGGAUAUUCAUGUGGUUUUUACUUGGCUGGCGAUGCCAACUGUUGCGUCAUCGCAGUUCCUAGUCGCAAGCCCAGUAAUUUGCGUGAGUAC
......((((((((..(...(((((.((((.(((((...((((((.........))))))....))))).)))).))))).)..)))))))). ( -35.30)
>consensus
GUGGGAUACUUAUGUGGGUUUUACUCGGUUGGC_AUGCCAACUGUUGCGUCAUCGGAGUUAUUAGUCGUAUGCCCAGUGAUUUGCGUGAGUAC
......((((((((..(...(((((((((((((...)))))))).((((.(.............).)))).....))))).)..)))))))). (-22.47 = -21.97 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:50 2006