Locus 7576

Sequence ID 3L_DroMel_CAF1
Location 20,355,903 – 20,356,008
Length 105
Max. P 0.999624
window12307 window12308

overview

Window 7

Location 20,355,903 – 20,356,008
Length 105
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 73.33
Mean single sequence MFE -18.54
Consensus MFE -14.06
Energy contribution -13.40
Covariance contribution -0.66
Combinations/Pair 1.12
Mean z-score -2.21
Structure conservation index 0.76
SVM decision value 3.80
SVM RNA-class probability 0.999624
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20355903 105 + 23771897
CGGCCACCCACUAUUGCCCCCAAGCCGAGAUGUUAUCCAGGAUCUACAGAUCCCAGUUGUCCGCAACCAACUCAACCUACCACAACAAGGACACCAUUAACUACA
((((...................)))).((((...(((.(((((....)))))..((((....)))).....................)))...))))....... ( -18.41)
>DroEre_CAF1 25085 105 + 1
CGGCCCCCCACUAUUGCGCCCAAGCCGAGAUGUUAUCCAGGAUCUACAGAUCCUAGUUGUCCGCAACCAACUCAACCUACCACAGUAAGGACACCAUUAACUACA
.((..((..(((...((......)).(((.((......((((((....)))))).((((....)))))).)))..........)))..))...)).......... ( -20.10)
>DroAna_CAF1 25544 96 + 1
CGCACUCCUACUCCCGCUCCGAAACCCAAUUGCUAUCCAGGAUCAACUGAUCCACGUUGCCCACAAACAAC---------AACUAGAAGGAUUCCAAUCACAACU
............................((((..((((.(((((....)))))..((((........))))---------........))))..))))....... ( -17.10)
>consensus
CGGCCACCCACUAUUGCCCCCAAGCCGAGAUGUUAUCCAGGAUCUACAGAUCCAAGUUGUCCGCAACCAACUCAACCUACCACAACAAGGACACCAUUAACUACA
............................((((...(((.(((((....)))))..((((........)))).................)))...))))....... (-14.06 = -13.40 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 20,355,903 – 20,356,008
Length 105
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 73.33
Mean single sequence MFE -32.07
Consensus MFE -23.52
Energy contribution -26.20
Covariance contribution 2.68
Combinations/Pair 1.26
Mean z-score -1.53
Structure conservation index 0.73
SVM decision value 1.51
SVM RNA-class probability 0.960318
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20355903 105 - 23771897
UGUAGUUAAUGGUGUCCUUGUUGUGGUAGGUUGAGUUGGUUGCGGACAACUGGGAUCUGUAGAUCCUGGAUAACAUCUCGGCUUGGGGGCAAUAGUGGGUGGCCG
..........(((..(((((((((..(((((((((.(((((...)))..(..(((((....)))))..)....)).)))))))))...))))))).))..).)). ( -33.30)
>DroEre_CAF1 25085 105 - 1
UGUAGUUAAUGGUGUCCUUACUGUGGUAGGUUGAGUUGGUUGCGGACAACUAGGAUCUGUAGAUCCUGGAUAACAUCUCGGCUUGGGCGCAAUAGUGGGGGGCCG
..........(((.((((((((((.((((((((((.(((((...)))..((((((((....))))))))....)).))))))))....)).))))))))))))). ( -37.10)
>DroAna_CAF1 25544 96 - 1
AGUUGUGAUUGGAAUCCUUCUAGUU---------GUUGUUUGUGGGCAACGUGGAUCAGUUGAUCCUGGAUAGCAAUUGGGUUUCGGAGCGGGAGUAGGAGUGCG
..((((..(((((((((....((((---------(((((((...(....)..(((((....))))).)))))))))))))))))))).))))............. ( -25.80)
>consensus
UGUAGUUAAUGGUGUCCUUAUUGUGGUAGGUUGAGUUGGUUGCGGACAACUAGGAUCUGUAGAUCCUGGAUAACAUCUCGGCUUGGGAGCAAUAGUGGGAGGCCG
..........(((.(((((((((((..((((((((.((.(((....)))((((((((....))))))))....)).))))))))...)))))))..)))).))). (-23.52 = -26.20 +   2.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:38 2006