Locus 7574

Sequence ID 3L_DroMel_CAF1
Location 20,354,825 – 20,354,933
Length 108
Max. P 0.919473
window12305

overview

Window 5

Location 20,354,825 – 20,354,933
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 68.21
Mean single sequence MFE -32.93
Consensus MFE -16.38
Energy contribution -17.25
Covariance contribution 0.87
Combinations/Pair 1.29
Mean z-score -2.07
Structure conservation index 0.50
SVM decision value 1.13
SVM RNA-class probability 0.919473
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20354825 108 - 23771897
CAUCUAGCUUUCUGUGUAGUUAUAGGUAGCCGAGUUGUGAUUGGUUGAGUUGGUUGUGGGCAACUAGGAUCUGUAGAUCCUGGGUGGCAUCUGGGCUUGGGUGCAGUU
((.(((((((((((((....)))))).((((((.......))))))))))))).))....((.((((((((....)))))))).))((((((......)))))).... ( -34.50)
>DroEre_CAF1 24058 99 - 1
CAUCUAG---------UAGUUGUAGGUAUCGGAGUCGUGAUUGGUUGAGUUGGUUGUGGACAUCUGGGAUCUGUAGAUCCUGGGUAGCAUCUGGGUUUGGGUGCAAUU
.((((((---------...((((((((..((((.(((..((..(.....)..))..)))...))))..))))))))...)))))).((((((......)))))).... ( -29.40)
>DroAna_CAF1 24328 96 - 1
CAUCGUGGUCUAGAUGUUGUCAAAGGUGUCC---------UUG---UAGUUGGUUGAGGACAGCUUGGGUCCGUUGAUCCGGGGUAACAUCUUGGCUUAGGCGCACUA
...(((((((.(((((((..(.(((.(((((---------(((---........)))))))).)))(((((....)))))..)..))))))).))))...)))..... ( -34.90)
>consensus
CAUCUAG_U_U___UGUAGUUAUAGGUAUCCGAGU_GUGAUUGGUUGAGUUGGUUGUGGACAACUAGGAUCUGUAGAUCCUGGGUAGCAUCUGGGCUUGGGUGCAAUU
..................(((........((((.(((........))).)))).....)))..((((((((....))))))))...((((((......)))))).... (-16.38 = -17.25 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:35 2006