| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,339,544 – 20,339,636 |
| Length | 92 |
| Max. P | 0.922070 |
| Location | 20,339,544 – 20,339,636 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 89.01 |
| Mean single sequence MFE | -24.83 |
| Consensus MFE | -22.00 |
| Energy contribution | -23.00 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.922070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20339544 92 - 23771897 ACAAACCAAUUU--UUUUCUGUAUGUAUGUAUCUGGGAUACAUCCGUACAGCAGGGUGACCACUAUUUGCGAUGUCGCAUUUUCACCUGGGAAA .....((.....--....(((((((.(((((((...))))))).)))))))..((((((.....(..((((....))))..))))))))).... ( -28.00) >DroSec_CAF1 8987 94 - 1 ACAAACCAAUAUCUUUUCCUGUAUGUAUGUAUCUGAGAUACAUCCGUACUGCAGGGUGACCAAUAUUUGCAAUGUCGCAUUUUCACCUGGGAAA ..............(((((((((((.(((((((...))))))).)))))....((((((.....(..(((......)))..))))))))))))) ( -24.60) >DroSim_CAF1 9001 90 - 1 ACAAACCAAUUUCU----CUGUAUCUAUGUAUCUGGGAUACAACCGUACAGCAGGGUGAUGACUAUUUGCAAUGUCGCAUUUUCACCUGGGAAA .....(((....((----((((((...((((((...))))))...)))))).))(((((((((..........)))).....)))))))).... ( -21.90) >consensus ACAAACCAAUUUCUUUU_CUGUAUGUAUGUAUCUGGGAUACAUCCGUACAGCAGGGUGACCACUAUUUGCAAUGUCGCAUUUUCACCUGGGAAA .....((...........(((((((.(((((((...))))))).)))))))..((((((........(((......)))...)))))))).... (-22.00 = -23.00 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:22 2006