Locus 7558

Sequence ID 3L_DroMel_CAF1
Location 20,295,871 – 20,295,962
Length 91
Max. P 0.633988
window12280

overview

Window 0

Location 20,295,871 – 20,295,962
Length 91
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 75.76
Mean single sequence MFE -24.90
Consensus MFE -13.25
Energy contribution -14.42
Covariance contribution 1.17
Combinations/Pair 1.28
Mean z-score -1.69
Structure conservation index 0.53
SVM decision value 0.21
SVM RNA-class probability 0.633988
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20295871 91 - 23771897
-------GGAGGAUCGAAAGCUGUUUUGGAAACGUCUGAAGAGAUCCCUGGAGGUCAUAGGGAUCAA---CUCCAGAGAGAUCAGUGUUUAGAAAACA----UGU
-------............((((((((..(((((.((((...((((((((.......))))))))..---(((....))).)))))))))..))))))----.)) ( -27.20)
>DroPse_CAF1 5020 97 - 1
CAAAGCUGGAGGAGCGUAAACUAUUUUGGAAACGCUUAAGAAGAUCGCUGGAAGUCAUUGGCAUCAGUAGUUCGAAAGAGAG--AGCUUGAGGAAACA----C--
..(((((....((((((...(......)...)))))).....(((.((..(......)..))))).....(((....)))..--)))))..(....).----.-- ( -21.40)
>DroSim_CAF1 5147 91 - 1
-------GGAGGAGCGGAAGCUGUUCUGGAAACGUUUGAGGAGAUCCCUGGAGGUCAUAGGGAUCAA---CUCCAGAGAGAUCAGUGUUUAGAAAACA----CGU
-------((((.(((....))).))))(....)....(((..((((((((.......))))))))..---)))...........(((((.....))))----).. ( -32.50)
>DroEre_CAF1 5440 91 - 1
-------GGAGGAGCGGAAGCUGUUCUGGAAACGUUUGAGGAGAUCUCUUGACCUCAUAGGGAUCAG---UUCCAGAGAGAUCAAUGUUUAGAAAUCA----UGU
-------((((.(((....))).))))(....).((((((.(((((((((..........(((....---.))).))))))))..).)))))).....----... ( -25.60)
>DroYak_CAF1 5071 95 - 1
-------GGAGGAUCGGAAGCUGUUUUGGAAACGUUUGAGGAGGUCCCUGGACGUCAUAGGGAUCAG---UUCCAGAGAGAUGAAUGUUUAGAAAACAAUUUUUU
-------........(((((.((((((..((((((((.....((((((((.......))))))))..---(((....)))..))))))))..)))))).))))). ( -23.00)
>DroPer_CAF1 5020 99 - 1
CAAAGCUGGAGGAGCGUAAACUAUUUUGGAAACGCUUAAGAAGAUCGCUGGAAGUCAUUGGCAUCAGUAGUUCGAAAGAGAG--AGCUUGAGAAAACA----CUU
..(((((....((((((...(......)...)))))).....(((.((..(......)..))))).....(((....)))..--))))).........----... ( -19.70)
>consensus
_______GGAGGAGCGGAAGCUGUUUUGGAAACGUUUGAGGAGAUCCCUGGAAGUCAUAGGGAUCAG___UUCCAGAGAGAUCAAUGUUUAGAAAACA____CGU
.......((((.(((....))).))))(....).((((((..((((((((.......)))))))).....(((....))).......))))))............ (-13.25 = -14.42 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:11 2006