| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,287,319 – 20,287,432 |
| Length | 113 |
| Max. P | 0.562802 |
| Location | 20,287,319 – 20,287,432 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 84.49 |
| Mean single sequence MFE | -29.47 |
| Consensus MFE | -17.64 |
| Energy contribution | -17.56 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.562802 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20287319 113 - 23771897 AACGAGUUUCAGCUCACCAGAUGUAUCUGAGCGAUUCUUAGAUGCAAAU--CAAGGGCGAAACAAGUACUACGAGUGCUUUUUGCUGUCGUC---CACGUGCAUUGCCAACUAAUGAA ...((((....))))....(((((((.((..((((.(((.(((....))--))))(((((((..(((((.....))))))))))))))))..---)).)))))))............. ( -30.40) >DroSec_CAF1 7361 107 - 1 AACAAGUUUCAGCUCACCAGAUGUAUCUGAGCGAUUCGUAGAUGCAAAU--CAAG------ACAAGUACUACUAGUGCUUGUUGUUGUCGUC---CACGUGCAUCGCAAACUAAUGAA ....(((((........((((....)))).(((((.(((.(((((((..--...(------((((((((.....))))))))).))).))))---.)))...))))))))))...... ( -31.60) >DroSim_CAF1 7304 107 - 1 AACAAGUUUCAGCUCACCAGAUGUAUCUGAGCGAUUCUUAGAUGCAAAU--CAAG------ACAAGUACUACUAGUGCUUGUUGUUGUCGUC---CACGUGCAUCGCAAACUAAUGAA .......((((........(((((((.((..((((.....(((....))--)..(------((((((((.....)))))))))...))))..---)).))))))).........)))) ( -29.43) >DroEre_CAF1 10736 112 - 1 AACAAGUUUCACCUCACCAGAUGUAUCUAUCCGAUUCCUAGAUGCAAAUCUCAAGCGCAAAACAAGUGC---UAGUGCUUGUAGUUGUUGUC---CACGUGCAUCGGCAACUAAUCAA .((((((..(...........((((((((.........)))))))).......(((((.......))))---).).))))))((((((((..---.........))))))))...... ( -25.10) >DroYak_CAF1 19279 113 - 1 AACUAGUUUCAGCUCACCAGAUGUAUCUAUCCGAUUCUUAGAUGCAAAU--GAAGCGCAAUACAAGUGC---UAGUGCUUGUACUUGUUGUCGGUCACGUGCAUCGACAACUAAUCAA .....((((((..((....))((((((((.........))))))))..)--)))))....((((((((.---...))))))))...((((((((((....).)))))))))....... ( -30.80) >consensus AACAAGUUUCAGCUCACCAGAUGUAUCUGAGCGAUUCUUAGAUGCAAAU__CAAG_GC_A_ACAAGUACUACUAGUGCUUGUUGUUGUCGUC___CACGUGCAUCGCCAACUAAUGAA ....((((...((....((((....))))...........((((((...............((((((((.....))))))))......(((.....))))))))))).))))...... (-17.64 = -17.56 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:06 2006