Locus 753

Sequence ID 3L_DroMel_CAF1
Location 2,241,864 – 2,241,960
Length 96
Max. P 0.522188
window1160

overview

Window 0

Location 2,241,864 – 2,241,960
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 84.51
Mean single sequence MFE -43.62
Consensus MFE -31.56
Energy contribution -34.15
Covariance contribution 2.59
Combinations/Pair 1.17
Mean z-score -1.93
Structure conservation index 0.72
SVM decision value -0.02
SVM RNA-class probability 0.522188
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2241864 96 - 23771897
CUGCUCCGCCUCGGGCGAGGGCUGCUUGGGGGAGGCACCUGCAGGCAGUCCUCCGUCCAGCGGCGUCACCUUGAACUGGGUUUUGCUGACUUCGCA
..((........((((((((((((((((.(((.....))).))))))))))).)))))(((((((..((((......))))..))))).))..)). ( -47.20)
>DroSec_CAF1 2749 96 - 1
CUGCUCCGCCUCGGGCGAGGGCUGCUUGGAGGAGGCACCUGCAGGACGUCCUCCGUCAAGCGGCGUCACCUUAAAUUGGGUUUUGCUGACUUCGCA
.....(((...)))((((((((((((((..((((((.((....))..).)))))..))))))))...((((......))))........)))))). ( -40.40)
>DroSim_CAF1 5000 96 - 1
CUGCUCCGCCUCGGGCGAGGGCUGCUUGGGGGAGGCACCUGCAGGAAGUCCUCCGUCCAGCGGCGUCACCUUGAACUGGGUUUUGCUGACUUCGCA
..((........(((((((((((.((((.(((.....))).)))).)))))).)))))(((((((..((((......))))..))))).))..)). ( -40.60)
>DroEre_CAF1 5529 96 - 1
CUGCUCCGUCUCGGGCGAGGGCUGCUUGGGGGAGCCACCUGCAGGUAGCCCUCCGUCCAGCGGCGUCACCUGGAAAAAGGUUUUGCUGACUUGGCA
..(((..(((..((((((((((((((((.(((.....))).))))))))))).)))))...((((..((((......))))..)))))))..))). ( -50.60)
>DroYak_CAF1 5687 96 - 1
CUGCUCCGAUUCGGGCGAGGGCUGCUUGGGGGAGGCACCUGCAGGUAGUCCUCCGUCCAGCGGCGUUACCUGGAAAGAGGUUUUGCUGACUUGGCA
..((.(((...)))))((((((((((((.(((.....))).)))))))))))).(((.(((((((..((((......))))..))))).)).))). ( -46.80)
>DroPer_CAF1 511 93 - 1
CUGAUCAGCCUCCGGCGAUGGCUGCUUGGGCGAACCAACAGCUGCUGGA---CCGUCCAGAGGCGUCACUUGAAACUCUGUUUUGGUGAUCCGGCA
.......(((.(((((...(((((.((((.....))))))))))))))(---(((..(((((...((....))..)))))...)))).....))). ( -36.10)
>consensus
CUGCUCCGCCUCGGGCGAGGGCUGCUUGGGGGAGGCACCUGCAGGUAGUCCUCCGUCCAGCGGCGUCACCUGGAACUGGGUUUUGCUGACUUCGCA
..((........((((((((((((((((.(((.....))).))))))))))).)))))..(((((..((((......))))..))))).....)). (-31.56 = -34.15 +   2.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:19 2006