Locus 7528

Sequence ID 3L_DroMel_CAF1
Location 20,226,013 – 20,226,114
Length 101
Max. P 0.707823
window12237

overview

Window 7

Location 20,226,013 – 20,226,114
Length 101
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 72.03
Mean single sequence MFE -25.17
Consensus MFE -15.40
Energy contribution -15.98
Covariance contribution 0.59
Combinations/Pair 1.29
Mean z-score -1.32
Structure conservation index 0.61
SVM decision value 0.37
SVM RNA-class probability 0.707823
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20226013 101 - 23771897
------A--AAGGCAAAGUUUUCUGGAUAGCGCCUGCCUCGCAACUCCAGUGGCGCACGCAUUCCGCCUCCGGAAAAGUAUUUGUA-------ACAGUGUUUAAACUCACAUAGCC
------.--..(((..(.(((((((((..((((((((...)))((....)))))))..((.....)).))))))))).).......-------...(((........)))...))) ( -27.50)
>DroSec_CAF1 39480 78 - 1
------A--AAGGCAAAGUUUUCCGGAUG-----------------------GCGCACGCAUUCCGUCUCCGGAAAAGUAUUUGUA-------ACAGUGUUUAAACUCACAUAGCC
------.--..(((..(.(((((((((.(-----------------------(((.........))))))))))))).).......-------...(((........)))...))) ( -22.70)
>DroSim_CAF1 34876 78 - 1
------A--AAGACAAAGUUUUUCGGAUA-----------------------GCGCACGCAUUCCGCCUCCGGAAAAGUAUUUGUA-------ACAGUGUUUAAACUCACAUAGCC
------.--...(((((.(((((((((..-----------------------(((.........))).)))))))))...))))).-------...(((........)))...... ( -16.20)
>DroEre_CAF1 35692 100 - 1
---------ACGGCAAAGUUUUCCGGAUAGCGCCUGCUUCGCAAUUCCAGUGGCGCACACAUUCCGCCUCCGGAAACGCAUUUGUA-------ACAGUGUUUAAACUCACAUAGCC
---------..(((...((((((((((..(((((.(((..........))))))))...(.....)..)))))))).)).......-------...(((........)))...))) ( -25.80)
>DroYak_CAF1 48495 100 - 1
---------ACGGCAAAGUUUUCCGGAUAGCGCCUGCUUCGCAAUUCCAGUGGCGCACACAUUCCGCCUCCGGAAACGCAUUUGUA-------ACAGUGUUUAAACUCACAUAGCC
---------..(((...((((((((((..(((((.(((..........))))))))...(.....)..)))))))).)).......-------...(((........)))...))) ( -25.80)
>DroAna_CAF1 36095 112 - 1
CUACCGAGGCCGGAGAACUUUUCCGGAUUACGCCUGCUGCGUAAUUUCAGAGGCGC-CCCAUUCCGCCUUCGGCAAAGUAUUUGUAGCAUUAAACACUGUUCAGGCUCC---ACUC
.....(((...((((.(((((.(((((((((((.....))))))))...((((((.-.......))))))))).))))).((((.((((........))))))))))))---.))) ( -33.00)
>consensus
______A__AAGGCAAAGUUUUCCGGAUAGCGCCUGCUUCGCAAUUCCAGUGGCGCACGCAUUCCGCCUCCGGAAAAGUAUUUGUA_______ACAGUGUUUAAACUCACAUAGCC
............(((((.(((((((((..(((.......))).........((((.........)))))))))))))...)))))...........(((........)))...... (-15.40 = -15.98 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:28 2006