| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,210,408 – 20,210,501 |
| Length | 93 |
| Max. P | 0.758241 |
| Location | 20,210,408 – 20,210,501 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 77.33 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -15.25 |
| Energy contribution | -15.33 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.758241 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20210408 93 + 23771897 CGCAAUCUGGAGCAAGUGUCGCAGUGUGGAAACACGCUUGCAGACA-------ACAUAACAUACC-GUGCCGAAGCCACCCACUCCGGCUGCCAG----UCCACU .......(((((((..((((((((((((....))))).))).))))-------............-..((((.((.......)).)))))))...----)))).. ( -29.60) >DroSec_CAF1 24240 93 + 1 CACAAUCUGGAGCAAGUGUCGCAGUGUGGAAACACGCUUGCAGACA-------ACAUAACAUACC-GUGCCGAUGCCACCCACUUCGUCCUCCAC----UCCACU .......(((((....((((((((((((....))))).))).))))-------............-.....((((..........)))).....)----)))).. ( -24.20) >DroSim_CAF1 19162 93 + 1 CGCAAUCUGGAGCAAGUGUCGCAGUGUGGAAACACGCUUGCAGACA-------ACAUAACAUACC-GUGCCGAAGCCACCCACUCCGUCCUCCAC----UCCACU .......(((((....((((((((((((....))))).))).))))-------............-((((....).)))...............)----)))).. ( -24.30) >DroEre_CAF1 19504 83 + 1 CGCAAUCUGGAGCAAGUGUCGCAGUGUGGAAACACGCUUGCAGACAACGGAGAACAUAACACACC-GUGCCGAAGCCACCCA------------C---------U .......(((.((...((((((((((((....))))).))).)))).(((...((..........-)).)))..))...)))------------.---------. ( -24.40) >DroYak_CAF1 32786 95 + 1 CGCAAUCUGGAGCAAGUGUCGCAGUGUGGAAACACGCUUGCAGACAACGGACAACAUGACAUGCC-GUGCCGAAGCCACCCACUUCUGCCUCCAC---------U .......(((((....((((((((((((....))))).))).))))((((.((........))))-))((.((((.......)))).))))))).---------. ( -32.50) >DroAna_CAF1 19454 97 + 1 CGCAAUCUAGAGCAAGUGUCGCAGUGUGGAAACAUGUUCCCAGACAUC------CAAAACAUCCCAGCACCCAAGCAGACCUCCUCUACC--CAGACCUUCUUCU .......(((((..((.(((...((.(((.((....)).))).))...------............((......)).))))).)))))..--............. ( -15.50) >consensus CGCAAUCUGGAGCAAGUGUCGCAGUGUGGAAACACGCUUGCAGACA_______ACAUAACAUACC_GUGCCGAAGCCACCCACUUCGGCCUCCAC____UCCACU .......(((......((((((((((((....)))))).)).))))....................((......))...)))....................... (-15.25 = -15.33 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:20 2006