Locus 751

Sequence ID	3L_DroMel_CAF1
Location	2,241,156 – 2,241,248
Length	92
Max. P	0.541825

overview

Window 7

Location	2,241,156 – 2,241,248
Length	92
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	86.18
Mean single sequence MFE	-22.00
Consensus MFE	-15.16
Energy contribution	-16.40
Covariance contribution	1.24
Combinations/Pair	1.05
Mean z-score	-1.72
Structure conservation index	0.69
SVM decision value	0.02
SVM RNA-class probability	0.541825
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2241156 92 + 23771897
GCCGCCAGUGUGGC-CCAUUGAGCACGACUGAAACACGCUAACGCCUUUAGCUCGGCAGCACUGGCAGCUCCAACAAAAAGCUUCAAUUUAAA
((.((((((((.((-(....((((..(.......)..((....)).....))))))).)))))))).))........................ ( -28.60)
>DroSec_CAF1 2040 93 + 1
UUCGACAGUGUGACCCCAUUGAACACGAUUGAAAACCCCUAACGCCUUCUUCUCGGCAGCACUGGCAGCUUCAACAAAAAGCUUCAAUUUAAA
.....((((((..((.....(((..((.(((........)))))..))).....))..))))))(.(((((.......))))).)........ ( -16.20)
>DroSim_CAF1 4291 93 + 1
GCCGGCAGUGUGACCCCAUUGAAGACGAUUGAAAUACCCUAACGCCUUCUUCUCGGCAGCACUGGCAGCUUCAACAAAAAGCUUCAAUUUAAA
...(.((((((..((.....((((.((.(((........))))).)))).....))..)))))).)(((((.......))))).......... ( -21.10)
>DroEre_CAF1 4786 91 + 1
GCCGCCAGUGUGAC-CCAUCGCCAACGACUGAAACACCCUAACGCCUUUUGCUUAGCAGAACUGGCAGCUUCAACAAAAAGCA-CAAUUUAAA
...(((((((((..-.(((((....))).))...)))..........(((((...))))))))))).((((.......)))).-......... ( -18.60)
>DroYak_CAF1 4944 91 + 1
GCCGCCAGUGUGAC-CCACUGGCAACGACUGAAACACCCUAACGCCUUUGGCUUAGCAGCACUGGCAGCUUCAACAAAAAGCA-CAAUUUAAA
((((((((((....-.)))))))...(.(((.......((((.(((...)))))))))))...))).((((.......)))).-......... ( -25.51)
>consensus
GCCGCCAGUGUGAC_CCAUUGAAAACGACUGAAACACCCUAACGCCUUUUGCUCGGCAGCACUGGCAGCUUCAACAAAAAGCUUCAAUUUAAA
...((((((((.....(((((....))).))............(((........))).)))))))).((((.......))))........... (-15.16 = -16.40 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:16 2006