Locus 7505

Sequence ID 3L_DroMel_CAF1
Location 20,167,969 – 20,168,062
Length 93
Max. P 0.584282
window12206

overview

Window 6

Location 20,167,969 – 20,168,062
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 78.96
Mean single sequence MFE -20.93
Consensus MFE -14.05
Energy contribution -14.25
Covariance contribution 0.20
Combinations/Pair 1.20
Mean z-score -1.24
Structure conservation index 0.67
SVM decision value 0.10
SVM RNA-class probability 0.584282
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20167969 93 + 23771897
UCGUGUGCAAUCUUGUGGAAGAGAUCUGCACGAGCGGCACAGAUGCGGCAUAGAACAAUAUCCUGCAGAAACAAAGUAACAUUAAAGUCAAUA
((.(((((...((((((..((....)).))))))..)))))))(((((.(((......))).))))).......................... ( -22.10)
>DroVir_CAF1 6104 80 + 1
UCGUGAGCAAUCUUGUGGAAGAGAUCCGCACGCGCAGCACAAAUGCGACACAAUACAAUGUCCUGAAA--GCAAA-U--AGA-AUG-------
..(((.((.(((((......)))))..)).)))((.(((....)))((((........))))......--))...-.--...-...------- ( -15.60)
>DroGri_CAF1 6632 86 + 1
UCAUGUGCAAUUUUGUGGAAGAGAUCCGCACGAGCGGCACAAAUGCGACACAACACAAUGUCCUAAAA--GCAAACCAAAAU-UUA----AUA
...(((((..((.((((((.....)))))).))...)))))..(((((((........))))......--))).........-...----... ( -18.50)
>DroSec_CAF1 263 93 + 1
UCGUGUGCAAUCUUGUGGAAGAGGUCUGCACGAGCGGCACAGAUGCGACAUAGAACAAUAUCCUGCAGAAACAAAAUAACAUUAAAGUCAAUA
((.(((((...((((((..((....)).))))))..)))))))((((..(((......)))..)))).......................... ( -18.50)
>DroEre_CAF1 271 92 + 1
UCGUGUGCAAUCUUGUGGAAGAGAUCUGCACGAGCGGCACAGAUGCGGCAUAAGACAAUGUCCUGCAGAAACGAAAUAGCGUUAAAGUU-AUA
((((((((...((((((..((....)).))))))..))))...((((((((......))).)).)))...)))).(((((......)))-)). ( -26.20)
>DroYak_CAF1 260 92 + 1
UCGUGUGCAAUCUUGUGAAAGAGAUCUGCACGAGCGGCACAGAUGCGGCAUAAGACAAUGUCCUGCAGGAGCAAAAUAGCGUUCAUGUU-AUA
.(((((((((((((......))))).)))))..)))(((..((((((((((......))))).(((....))).....)))))..))).-... ( -24.70)
>consensus
UCGUGUGCAAUCUUGUGGAAGAGAUCUGCACGAGCGGCACAGAUGCGACAUAAAACAAUGUCCUGCAGAAACAAAAUAACAUUAAAGU__AUA
...(((((..((.((((((.....)))))).))...)))))..((((..(((......)))..)))).......................... (-14.05 = -14.25 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:58 2006