Locus 7503

Sequence ID 3L_DroMel_CAF1
Location 20,166,135 – 20,166,231
Length 96
Max. P 0.687575
window12202

overview

Window 2

Location 20,166,135 – 20,166,231
Length 96
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.36
Mean single sequence MFE -34.03
Consensus MFE -18.71
Energy contribution -19.72
Covariance contribution 1.01
Combinations/Pair 1.34
Mean z-score -2.36
Structure conservation index 0.55
SVM decision value 0.32
SVM RNA-class probability 0.687575
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20166135 96 + 23771897
AAAGGCGCAGCUGCGCAAGGCGAGAAUCAUCCUGAAAGAAUCCGAUGGCGACC------AAGUGGCCGCGGUCCAGGAAGUCCUGCAAUUGUGUGAAAACCA
....((((....))))...(((.((....(((((...((..(((.((((.((.------..)).))))))))))))))..)).)))...((.((....)))) ( -28.20)
>DroSec_CAF1 3247 96 + 1
AAAGGCGCAGUUGCGCAGGGCGAGAAACAUUCUGAAUGAAUCCGAUGGCGACC------AAGUGGCCGCGGUCCAGGAAGUCCUGCAACUGUGUGAAAAGCA
....((((((((((..(((((........(((.....)))((((((.(((.((------....)).))).)))..))).)))))))))))))))........ ( -36.50)
>DroSim_CAF1 5595 96 + 1
AAAGGCGCAGUUGCGCAGGGCGAGAAACAUCCUUAAUGAAUCCGAUGGCGACC------AAGUGGCCGCGGUCCAGGAAGUCCUGCAACUGUGUGAAAAGCA
....((((((((((..((((((((.......)))......((((((.(((.((------....)).))).)))..))).)))))))))))))))........ ( -35.90)
>DroEre_CAF1 3257 96 + 1
AAAGGCACAGUUGCGCAGGGCGAGAAACAUCCUGAGCGAAUCCGAUGGAGACC------AAGUGGCUGCCGUCCAGGAAGUCCUGCAACUGUGCGAACAGCA
....((((((((((..((((((.....).(((((...(....)(((((((.((------....)))).)))))))))).)))))))))))))))........ ( -37.70)
>DroYak_CAF1 3175 96 + 1
AAAGGUACAGUUGCGAAGGGCGAGAAACAUCCUGAGUGAAUCCGAUGGAGACC------AAGUGGCUGCGGUCCAGGAAGUCCUGCAAUUGUGCGAACAGCA
....((((((((((..((((((.....).((((((.((...(((..(....).------...)))...)).).))))).)))))))))))))))........ ( -30.70)
>DroAna_CAF1 3429 102 + 1
AAAGUUUCAGCUGAGGAAGACCAAAAAGAUGCUGGGAGCAUCGGAUGGAGAGCCAUCUGAAGUGGCAGCCAUGCGCGAGGUACUGGAUCUCUGUGAGAAACA
...(((((.((.((((.(((((.....(((((.....)))))(.((((...(((((.....)))))..)))).)....))).))...)))).))..))))). ( -35.20)
>consensus
AAAGGCGCAGUUGCGCAGGGCGAGAAACAUCCUGAAUGAAUCCGAUGGAGACC______AAGUGGCCGCGGUCCAGGAAGUCCUGCAACUGUGUGAAAAGCA
....((((((((((..((((((.....).(((((.......(((.(((..((.........))..))))))..))))).)))))))))))))))........ (-18.71 = -19.72 +   1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:54 2006