Locus 7499

Sequence ID 3L_DroMel_CAF1
Location 20,130,222 – 20,130,316
Length 94
Max. P 0.812138
window12191

overview

Window 1

Location 20,130,222 – 20,130,316
Length 94
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 90.13
Mean single sequence MFE -27.76
Consensus MFE -23.42
Energy contribution -24.54
Covariance contribution 1.12
Combinations/Pair 1.07
Mean z-score -1.54
Structure conservation index 0.84
SVM decision value 0.65
SVM RNA-class probability 0.812138
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20130222 94 - 23771897
GAGCUUCGCUUGGAUUUAUGUAACAUUCAAAGAUCCAAAAUCAGGGGGCUGGGGACAGUUUUCACUAUCCAGCUUUCGUUAUCAAAUGGUGCUG------
.(((.(((.((((((((.((.......)).)))))))).....(..(((((((...(((....))).)))))))..).........))).))).------ ( -27.40)
>DroSec_CAF1 44422 94 - 1
GAGCUUCGCUUGGAUUUAUGUAACAUUCAUAGGUCCAAAAUCAGGGGGCUGGGGACAGCUUUCAUUAUCCAGCUUUCGUUAUCAAAUGGUGCUG------
.........(((((((((((.......))))))))))).....(..(((((....)))))..)......((((..(((((....))))).))))------ ( -32.60)
>DroSim_CAF1 44607 94 - 1
GAGCUUCGCUUGGAUUUAUGUAACAUUCAUAGGUCCAAAAUCAGGGGGCUGGGGACAGUUUUCACUAUCCAGCUUUCGUUAUCAAAUGGUGCUG------
.(((.(((.(((((((((((.......))))))))))).....(..(((((((...(((....))).)))))))..).........))).))).------ ( -31.00)
>DroEre_CAF1 46436 93 - 1
GAGCUUCGCGUGGAUUUAUGUAAGAUUCAUAGGUCCAAAAUCAGG-GGCUGGGGCCACUUUUCACUAUGCAGCUUUCAUUAUCAAAUGGUGCUA------
.......(((((((((((((.......)))))))))......(((-(((....))).)))......))))(((..(((((....))))).))).------ ( -23.50)
>DroYak_CAF1 48859 99 - 1
GAGCUUCGCGUGGAUUAAUGUAACAUUCAUGGGGCCAAAAUCAGG-GGCUGGGGCCAGUUUUCACUAUCCAGCUUUCAUUAUCAAAUGGUGCUCCACUGU
((((..(.(((((((.........))))))).)((((......((-(((((((...(((....))).)))))))))..........))))))))...... ( -24.29)
>consensus
GAGCUUCGCUUGGAUUUAUGUAACAUUCAUAGGUCCAAAAUCAGGGGGCUGGGGACAGUUUUCACUAUCCAGCUUUCGUUAUCAAAUGGUGCUG______
.(((.(((..((((((((((.......))))))))))......((((((((((...((......)).)))))))))).........))).)))....... (-23.42 = -24.54 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:44 2006