Locus 748

Sequence ID 3L_DroMel_CAF1
Location 2,237,944 – 2,238,062
Length 118
Max. P 0.654682
window1151

overview

Window 1

Location 2,237,944 – 2,238,062
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 68.17
Mean single sequence MFE -25.32
Consensus MFE -11.09
Energy contribution -8.85
Covariance contribution -2.24
Combinations/Pair 1.41
Mean z-score -1.73
Structure conservation index 0.44
SVM decision value 0.25
SVM RNA-class probability 0.654682
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2237944 118 + 23771897
AAUGGGAACGGCCUGUUCCCAGGCACUGGGACACACCCACGACCCCUUUCGCCGGCCACUCACCAGGCGUAAUUUGGCUAAU--UCAUGCGUAAACAUUUGCGCUUGUUUACCCAACAUU
..((((...(((((((((((((...)))))).)))....(((......)))..))))......(((((((((((((((....--....)).))))...)))))))))....))))..... ( -37.30)
>DroPse_CAF1 18784 95 + 1
AUUGGAACCACUCGGUUCUU------------ACACUUACAAUCCCAU-------------AUCUGGUUGAAUUCCCCUAAAAGACUCACGUAAACAUUUACGAUUGUUUAUUUAACAAU
...((((((....)))))).------------.......(((((....-------------....)))))...................(((((....)))))((((((.....)))))) ( -14.70)
>DroSec_CAF1 18868 110 + 1
AAUGGGAACGGCCUGUUCCCAG--------ACACACCCACGACCCCUUUCGCCGGCCAUUCAUCAGGCGUAAUUUGGCUAAU--UCAUGCGUAAACAUUCGCGCUUGUUUACCCAACAUU
..((((...((((((((....)--------)))......(((......)))..))))......(((((((..((((((....--....)).)))).....)))))))....))))..... ( -25.60)
>DroSim_CAF1 18938 118 + 1
AAUGGGAACGGCCUGUUCCCAGGCACUGGGACACACCCACGACCCCUUUCGCCGGCCACUCAUCAGGCGUAAUUUGGCUAAU--UCAUGCGUAAACAUUCGCGCUUGUUUACCCAACAUU
..((((...(((((((((((((...)))))).)))....(((......)))..))))......(((((((..((((((....--....)).)))).....)))))))....))))..... ( -34.30)
>DroPer_CAF1 16755 95 + 1
AUUGGAACCACUCGGUUCUU------------ACACUUACAAUCCCAU-------------AUCUGGUUGAAUUCUCCUAAAAGACUCACGUAAACAUUUACGAUUGUUUAUUUAACAAU
...((((((....)))))).------------.......(((((....-------------....)))))...................(((((....)))))((((((.....)))))) ( -14.70)
>consensus
AAUGGGAACGGCCUGUUCCCAG________ACACACCCACGACCCCUUUCGCCGGCCA_UCAUCAGGCGUAAUUUGGCUAAU__UCAUGCGUAAACAUUUGCGCUUGUUUACCCAACAUU
..((((.(((.((((................................................))))))).....................((((((........))))))))))..... (-11.09 =  -8.85 +  -2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:11 2006