Locus 7477

Sequence ID 3L_DroMel_CAF1
Location 20,038,262 – 20,038,356
Length 94
Max. P 0.746568
window12158

overview

Window 8

Location 20,038,262 – 20,038,356
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 94.24
Mean single sequence MFE -23.55
Consensus MFE -20.69
Energy contribution -20.47
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.13
Structure conservation index 0.88
SVM decision value 0.46
SVM RNA-class probability 0.746568
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20038262 94 + 23771897
CACCCACACAUUGCAGCCAUUUGUGUAAUAGUGUGUGUCUGUCUAUGUGUGUUGCUUGUGCUUGGGUUUGUUGGUAUUAUUGACAAAUUCUAUU
....(((((((.((((.(((..............))).))))..)))))))..((....))..((((((((..((...))..)))))))).... ( -23.44)
>DroSec_CAF1 5333 90 + 1
CACCCACACAUUGCAGGUGUUUGUGUAAUAGUGUGUG----UCUAUGUGUGUUGCUUGUGCUUGAGUUUGUUGGUAUUAUUGACAAAUUCUAUU
....(((((((.(((.(..((........))..).))----)..)))))))..((....))..((((((((..((...))..)))))))).... ( -23.60)
>DroSim_CAF1 6291 90 + 1
CACCCACACAUUGCAGGUGUUUGUGUAAUAGUGUGUG----UCUAUGUGUGUUGCUUGUGCUUGAGUUUGUUGGUAUUAUUGACAAAUUCUAUU
....(((((((.(((.(..((........))..).))----)..)))))))..((....))..((((((((..((...))..)))))))).... ( -23.60)
>consensus
CACCCACACAUUGCAGGUGUUUGUGUAAUAGUGUGUG____UCUAUGUGUGUUGCUUGUGCUUGAGUUUGUUGGUAUUAUUGACAAAUUCUAUU
....(((((((((((........)))))).)))))..................((....))..((((((((..((...))..)))))))).... (-20.69 = -20.47 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:12 2006