| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,004,320 – 20,004,432 |
| Length | 112 |
| Max. P | 0.926209 |
| Location | 20,004,320 – 20,004,432 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.35 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -24.67 |
| Energy contribution | -25.33 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.926209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20004320 112 - 23771897 --------AGAGGAAUAACAUUAUUUCAAUAUGUACUUACACUCGAUGCGAAAUGUUUUUGGCAUUGGCUGGCAAUAAAAAAAUUAUUGCCUGGCAUUUACUUGUUCACGCGAUCGUCGC --------...((((((....))))))((((.(((........((((((.(((....))).))))))(((((((((((.....)))))))).)))...))).))))...(((.....))) ( -28.00) >DroSec_CAF1 94582 112 - 1 --------AGAGGAAUAACAUUAUUUCAAUAUGUACUUACACUCGAUGCGAAAUGUUUUUGGCAUUGGCUGGCAAUAAAAAAAUUAUUGCCUGGCAUUUACUUGUUCACGCGAUCGUCGC --------...((((((....))))))((((.(((........((((((.(((....))).))))))(((((((((((.....)))))))).)))...))).))))...(((.....))) ( -28.00) >DroSim_CAF1 53512 112 - 1 --------AGAGGAAUAACAUCAUUUCAAUAUGUACUUACACUCGAUGCGAAAUGUUUUUGGCAUUGGCUGGCAAUAAAAAAAUUAUUGCCUGGCAUUUACUUGUUCACGCGAUCGUCGC --------....((((((.........................((((((.(((....))).))))))(((((((((((.....)))))))).)))......))))))..(((.....))) ( -27.90) >DroEre_CAF1 45000 112 - 1 --------AGAGGAAUAACAUUAUUUCAAUAUGUACUUACACUCGAUGCGAAAUGUUUUCGGCAUUGGCUGGCAAUAAAAAAAUUAUUGCCUGCCAUUUACUUGUUCACGCGAUCGUCGC --------.((((((((....))))))................(((((((.(((((.....)))))(((.((((((((.....)))))))).))).............))).)))))).. ( -28.40) >DroYak_CAF1 50725 112 - 1 --------AGAGGAAUAAAAUUAUUUCAAUAUGUACUUACACUCGAUGCGAAAUGUUUUUGGCAUUGGCUGGCAAUAAAAAAAUUAUUGCCUGGCUUUUACUUGUUCACGCGAUCGUCGC --------....((((((.........................((((((.(((....))).))))))(((((((((((.....)))))))).)))......))))))..(((.....))) ( -27.70) >DroAna_CAF1 48921 120 - 1 UUCGAAAGAGAGGAAUAACAUUAUUUCAAUAUGUACUUACACUCGAAGCGAAAUGUUUUUGGCAUUGGCUGGCAAUAAAAAAAUUAUUGCCCUGCAUUUACUUGUUCACGCGAUCGUCGC ..(((..(((.((((((....))))))....(((....))))))((.(((.(((((.....))))).((.((((((((.....))))))))..)).............)))..)).))). ( -25.80) >consensus ________AGAGGAAUAACAUUAUUUCAAUAUGUACUUACACUCGAUGCGAAAUGUUUUUGGCAUUGGCUGGCAAUAAAAAAAUUAUUGCCUGGCAUUUACUUGUUCACGCGAUCGUCGC ............((((((.........................((((((.(((....))).))))))(((((((((((.....)))))))).)))......))))))..(((.....))) (-24.67 = -25.33 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:21 2006