Locus 7435

Sequence ID 3L_DroMel_CAF1
Location 19,986,749 – 19,986,859
Length 110
Max. P 0.541383
window12080

overview

Window 0

Location 19,986,749 – 19,986,859
Length 110
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 89.59
Mean single sequence MFE -29.71
Consensus MFE -22.24
Energy contribution -22.56
Covariance contribution 0.32
Combinations/Pair 1.16
Mean z-score -1.56
Structure conservation index 0.75
SVM decision value 0.02
SVM RNA-class probability 0.541383
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19986749 110 - 23771897
GACGGCG------AGUGCGACAGGAAGUUGUAUAUCUAACUAACUUUGGAUAGUUUUUCUUUGCAGCUACGCAGAGUAAGCAGAAGAAACUUAGAUAAACAGCUGCCUAAAUUGUA
.......------..(((((.(((.((((((.(((((((....((((.....((((..((((((......)))))).)))).))))....))))))).)))))).)))...))))) ( -28.30)
>DroSec_CAF1 76840 110 - 1
GACGGCG------ACUGCCACAGGAAGUUGUAUAUCUAACUAACUUUGGAUAGUUUGUCUUUGCAGCUACGCAGAGUAAGCAGAAGAAACUUAGAUAAGCAGCUGCCUAAAUUGUA
...(((.------...)))..(((.((((((.(((((((....((((.....(((((.((((((......))))))))))).))))....))))))).)))))).)))........ ( -33.20)
>DroSim_CAF1 35550 110 - 1
GACGGCG------ACUGCUACAGGAAGUUGUAUAUCGAACUAACUUUGGAUAGUUUGUCUUUGCAGCUACGCAGAGUAAGCAGAAGAAACUUAGAUAAACAGCUGCCUAAAUUGUA
...(((.------...)))..(((.((((((.((((.......((((.....(((((.((((((......))))))))))).)))).......)))).)))))).)))........ ( -27.14)
>DroEre_CAF1 27287 110 - 1
GACGGCG------ACUGGGACAGGAAGUUGUAUGUCUAACUAACUGUGGAUAGUUUGCGUUUGCAGCUACGCACAGUAAGCGGAGGAAACUUAGAUAAACAGCUUCCUAAAUUGUA
.......------........((((((((((.(((((..((.((((((..(((((.((....)))))))..)))))).))..(((....)))))))).))))))))))........ ( -37.70)
>DroYak_CAF1 28564 116 - 1
GACUGCGACUUCGACUGCGACGGAAAGUUGUAUACCUAACUAACUUUGGAUAGUUUGUGCUGGCAGCUACGCACAGUAAGCAGAAGAAACCUAGAUAAACAGCUUCCUAAAUUGUA
...(((((..(((....))).((((.(((((.((.(((.....((((.......(((((((((...))).))))))......)))).....))).)).)))))))))....))))) ( -22.22)
>consensus
GACGGCG______ACUGCGACAGGAAGUUGUAUAUCUAACUAACUUUGGAUAGUUUGUCUUUGCAGCUACGCAGAGUAAGCAGAAGAAACUUAGAUAAACAGCUGCCUAAAUUGUA
.....................(((.((((((.(((((((((.((((((..(((((.((....)))))))..)))))).))..........))))))).)))))).)))........ (-22.24 = -22.56 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:00 2006