Locus 7428

Sequence ID 3L_DroMel_CAF1
Location 19,980,734 – 19,980,841
Length 107
Max. P 0.695546
window12069

overview

Window 9

Location 19,980,734 – 19,980,841
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 95.51
Mean single sequence MFE -30.10
Consensus MFE -24.92
Energy contribution -24.72
Covariance contribution -0.20
Combinations/Pair 1.08
Mean z-score -1.53
Structure conservation index 0.83
SVM decision value 0.34
SVM RNA-class probability 0.695546
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19980734 107 + 23771897
GCGGUAUAUGACAAACAGCCAGGACUCAGCCAACAAAGUCCCACGCUCAUGUGGCGUUUGCCACACCAGCAAACACACUACAUGCGAUAUCAGUUGGAGUCGCACUC
(((((...........(((..(((((..(....)..)))))...)))...(((((....)))))))).))............((((((.((....)).))))))... ( -28.30)
>DroSec_CAF1 71028 107 + 1
GCGGUAUAUGACAAACAGCCAGGACUCAGCCAACAAAGUCCCACGCUCAUGUGGUGUUUGCCACACCAGCAAACACACUAAAUGCGAUAGCAGUUGGAGUCGCACUC
(((((((((((......((..(((((..(....)..)))))...)))))))))((((((((.......)))))))).((((.(((....))).))))..)))).... ( -30.50)
>DroSim_CAF1 29698 107 + 1
GCGGUAUAUGACAAACAGCCAGGACUCAGCCAACAAAGUCCCACGCUCAUGUGGUGUUUGCCACACCAGCAAACACACUACAUGCGAUAGCAGUUGGAGUCGUACUC
......((((((...((((..(((((..(....)..)))))...(((((((((((((((((.......))))..))))))))))....))).))))..))))))... ( -32.50)
>DroEre_CAF1 21585 107 + 1
GCGGUGUAUGACAAACAGCCAGGACUCAGCCAACAAAGUCCCACGCUCUUGUGGUGUUUGCCACACCAGCAGACACCCUACAUGCGAUAUCAAUUGGAGUCGCACUC
...(((((..((((..(((..(((((..(....)..)))))...))).))))(((((((((.......))))))))).)))))(((((.((....)).))))).... ( -32.80)
>DroYak_CAF1 22478 106 + 1
GCGGUAUAUGACAAACAGCCAGGACUCAGCCAACAAAGCCCCACGCUCAUGUGGUGUUUGCCACACCAGCAAACACACUAC-UGCGAUAUCAGUUGGAGUCGUACUC
......((((((...((((..((......))............(((....(((.(((((((.......))))))))))...-.)))......))))..))))))... ( -26.40)
>consensus
GCGGUAUAUGACAAACAGCCAGGACUCAGCCAACAAAGUCCCACGCUCAUGUGGUGUUUGCCACACCAGCAAACACACUACAUGCGAUAUCAGUUGGAGUCGCACUC
(((((...........(((..(((((..(....)..)))))...)))...(((((....)))))))).))............((((((..(....)..))))))... (-24.92 = -24.72 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:49 2006