Locus 7421

Sequence ID 3L_DroMel_CAF1
Location 19,972,660 – 19,972,766
Length 106
Max. P 0.544903
window12057

overview

Window 7

Location 19,972,660 – 19,972,766
Length 106
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 89.26
Mean single sequence MFE -36.98
Consensus MFE -24.72
Energy contribution -25.28
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -2.29
Structure conservation index 0.67
SVM decision value 0.02
SVM RNA-class probability 0.544903
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19972660 106 + 23771897
AAACAACGACCCAGAUGGCCGUCAGUGGAAAAAAAGAGGAAAA-GUGGAAUGGCUCUGGAGCAGAAGCACAAGUUCCUUCAGUUUCCUCUCCUGCAGGCUCGUCUUU
............((((((((..(((.(.......((((((((.-..(((((.((((((...))).)))....))))).....))))))))))))..))).))))).. ( -31.51)
>DroSec_CAF1 63630 106 + 1
AAACAACGACCCAGAUGGCCGUCAG-GGAAAAAAGGAGGAAAAGGUGGAAUGGCUUUGGAGCAGAAGCACAAGUUCCUUCAGUUUCCUCUCCCGCAGGCUCGUCUUU
............((((((((....(-(((......(((((((..(.(((((.(((((......)))))....)))))..)..)))))))))))...))).))))).. ( -37.30)
>DroSim_CAF1 22161 106 + 1
AAACAACGACCCAGAUGGCCGUCAG-GGAAAAAAAGAGGAAAAGGUGGAAUGGCUCUGGAGCAGAAGCACAAGUUCCUUCAGUUUCCUCUCCCGCAGGCUCGUCUUU
............((((((((....(-(((......(((((((..(.(((((.((((((...))).)))....)))))..)..)))))))))))...))).))))).. ( -36.80)
>DroEre_CAF1 14559 103 + 1
AAACAAGGACCCAGCUGGCCGACAG-G--AAGAAGG-GGGAAUGGUGAAAUGGCUCUGGAGCAGCAGCACAGGUUCCUCCAGUUUCCUCUUCUGCAGGCUCGUCUUU
....((((((..((((.((.((.((-(--(((..((-((((((.(((.....(((....))).....)))..))))))))..))))))..)).)).)))).)))))) ( -39.80)
>DroYak_CAF1 14694 103 + 1
AAACAAGGACCCAGAUGGCCGACAG-G--AAGGGAG-GGGAAAGGUGGAAUGGCUCUGCAGCAGAAGCACAAGUUCCCCCAGUUUCCUCUUCUGCAGGCUCGUCUUU
............((((((((..(((-(--...((((-(..(..((.(((((.((((((...))).)))....))))).))..)..)))))))))..))).))))).. ( -39.50)
>consensus
AAACAACGACCCAGAUGGCCGUCAG_GGAAAAAAAGAGGAAAAGGUGGAAUGGCUCUGGAGCAGAAGCACAAGUUCCUUCAGUUUCCUCUCCUGCAGGCUCGUCUUU
............((((((((..(((.........((((((((..(.(((((.((((((...))).)))....)))))..)..)))))))).)))..))).))))).. (-24.72 = -25.28 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:37 2006