Locus 7414

Sequence ID 3L_DroMel_CAF1
Location 19,966,765 – 19,966,868
Length 103
Max. P 0.975724
window12044

overview

Window 4

Location 19,966,765 – 19,966,868
Length 103
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 87.22
Mean single sequence MFE -28.52
Consensus MFE -22.64
Energy contribution -23.20
Covariance contribution 0.56
Combinations/Pair 1.09
Mean z-score -2.40
Structure conservation index 0.79
SVM decision value 1.76
SVM RNA-class probability 0.975724
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19966765 103 + 23771897
GUCCUCGCC-GGGCACUCUGUUUGUUUUCAGUUCGAAAAUAGAUAUUCUGGCACUUACACGCAUUUAUAGUUCGGUUUGAUAAUGUG-CCGGACUUUCUGUUUGC
......(((-(((.....(((((((((((.....))))))))))).))))))........(((..((.((((((((..........)-)))))))...))..))) ( -28.40)
>DroSec_CAF1 8290 103 + 1
GUCCUCGCC-GGGCACUCUGUUUGUUUUCAGUUCGAAAAUAGAUAUUCUGGCACUUACAGGCUUUUAUAGUUCGGUUCGAUAGUGUG-CCGGACUUUCUGUUUGC
......(((-(((.....(((((((((((.....))))))))))).)))))).....(((((......((((((((.((....)).)-)))))))....))))). ( -30.10)
>DroSim_CAF1 8012 101 + 1
GUCCUCGCC-GGGCACUCUGUUUGUUUUCAGUUCGAAAAUAGAUAUUCUGGCACUUACAGGCUUUUACAGUUUGGUUUGAUAAUGUG-CCGGACU--CUGUUUGC
((((.....-))))....(((((((((((.....))))))))))).(((((((((((((((((..........)))))).))).)))-)))))..--........ ( -30.80)
>DroEre_CAF1 8746 105 + 1
GUCCUCGCCCUGGCACUCUGUUUGUUUUCAGUUUGAAAAUAGAUAUUCUGGCACUUACAGGCUUUUAUAGUUCGGCUUGAUAAUGUGUCCGGACUUUCUGUUUGC
((((..((....))....(((((((((((.....)))))))))))....((((((((((((((..........)))))).))).))))).))))........... ( -28.40)
>DroYak_CAF1 8700 87 + 1
------------------UGUUUGUUUUCAGUUUGAAAAUAGAUAUUCUGGCACUUACAGGCUUUUAUAGUUUGGUCUGAUAAUGUGUCCGGACUUUUUGUUUGC
------------------(((((((((((.....))))))))))).(((((((((((((((((..........)))))).))).))).)))))............ ( -24.90)
>consensus
GUCCUCGCC_GGGCACUCUGUUUGUUUUCAGUUCGAAAAUAGAUAUUCUGGCACUUACAGGCUUUUAUAGUUCGGUUUGAUAAUGUG_CCGGACUUUCUGUUUGC
((((......))))....(((((((((((.....))))))))))).(((((((((((((((((..........)))))).))).))).)))))............ (-22.64 = -23.20 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:24 2006