Locus 7408

Sequence ID 3L_DroMel_CAF1
Location 19,921,354 – 19,921,452
Length 98
Max. P 0.630743
window12032

overview

Window 2

Location 19,921,354 – 19,921,452
Length 98
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 89.55
Mean single sequence MFE -29.02
Consensus MFE -19.44
Energy contribution -20.75
Covariance contribution 1.31
Combinations/Pair 1.15
Mean z-score -2.34
Structure conservation index 0.67
SVM decision value 0.20
SVM RNA-class probability 0.630743
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19921354 98 + 23771897
CCCCAUCCUUGUUGCCACUGCCUGGGACCCUUCAACAACCAACAGGUGUUCCAAUCACAGCAG---CAGCAGCAACAAGCCCAAAGUGUCUGCUGCCCCUU
.........((((((...((..(((((((((............))).))))))..))..))))---))(((((((((.........))).))))))..... ( -26.60)
>DroSec_CAF1 57083 101 + 1
CCCCAUCCUUGUUGCCACUGCCUGGGACCCUUCAACAACCAACAGGUGUUCCAAUCGCAGCAGCGGCAGCAGCAACAAGCCCAAAGAGUCUGCUGCCCCUU
.......((((((((..((((((((((((((............))).))))))...((....)))))))..))))))))...................... ( -31.60)
>DroSim_CAF1 44420 101 + 1
CCCCAUCCUUGUUGCCACUGCCUGGGACCCUUCAACAACCAACAGGUGUUCCAAUCGCAGCAGCGGCAGCAGCAACAAGCCCAAAGUGUCUGCUGCCCCUU
..........(((((...(((.(((((((((............))).))))))...))))))))((((((((..((.........))..)))))))).... ( -32.40)
>DroYak_CAF1 64495 95 + 1
GCCCAUCCUUGUUGCCACUGCCUAGGAUUCUUCAACAACCAACAGAUGUUCCAGUCGCAGCAG------CAGCAACUGGUACAGAGUGCCUGCUGCCCCUU
.........((((((.((((....(((((((............))).)))))))).))))))(------(((((...(((((...)))))))))))..... ( -25.50)
>consensus
CCCCAUCCUUGUUGCCACUGCCUGGGACCCUUCAACAACCAACAGGUGUUCCAAUCGCAGCAG___CAGCAGCAACAAGCCCAAAGUGUCUGCUGCCCCUU
.........(((((((.((((.(((((((((............))).))))))......)))).)))))))(((.((.((.......)).)).)))..... (-19.44 = -20.75 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:13 2006