| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,829,999 – 19,830,090 |
| Length | 91 |
| Max. P | 0.998932 |
| Location | 19,829,999 – 19,830,090 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 94.51 |
| Mean single sequence MFE | -17.74 |
| Consensus MFE | -17.80 |
| Energy contribution | -17.64 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.81 |
| Structure conservation index | 1.00 |
| SVM decision value | 3.29 |
| SVM RNA-class probability | 0.998932 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19829999 91 + 23771897 UCUAUUUCUAUAUUAUACGUACGCUUUACGCGUAUGCGACACUUUUACUCAAGACAUUUUUGGUCAAGUGGAUUUUGUUGUACAUUCAUUU ..................((((((.....))))))((((((..((((((...(((.......))).))))))...)))))).......... ( -17.70) >DroSec_CAF1 13679 91 + 1 UUUAUUUCUAUAUUAUACGUACGCUUUACGCGUAUGCGACACUUUUACUCAAGACAUUUUUGGUCAAGUGGAUUUUGUUGUACUUUCAUUU ..................((((((.....))))))((((((..((((((...(((.......))).))))))...)))))).......... ( -17.70) >DroSim_CAF1 16923 91 + 1 UUUAUUUCUAUAUUAUACGUACGCUUUACGCGUAUGCGACACUUUUACUCAAGACAUUUUUGGUCAAGUGGAUUUUGUUGUACUUUCAUUU ..................((((((.....))))))((((((..((((((...(((.......))).))))))...)))))).......... ( -17.70) >DroEre_CAF1 13663 91 + 1 UCUAUAUAUAAAAUAUACGUACGCUCUGCGCGUAUACGACACUUUUACUCAAGACAUUUUUGGUCAAGUGGAUUUUGUUGUACUUUUAUUU .......((((((.....((((((.....))))))((((((..((((((...(((.......))).))))))...))))))..)))))).. ( -17.90) >DroYak_CAF1 13560 91 + 1 UCUAUAUCUAAAUUAUACGUACGCUCUACGCGUAUGCGACACUUUUACUCAAGACAUUUUUGGUCAAGUGGAUUUUGUUGUACUUUUAUUU ..................((((((.....))))))((((((..((((((...(((.......))).))))))...)))))).......... ( -17.70) >consensus UCUAUUUCUAUAUUAUACGUACGCUUUACGCGUAUGCGACACUUUUACUCAAGACAUUUUUGGUCAAGUGGAUUUUGUUGUACUUUCAUUU ..................((((((.....))))))((((((..((((((...(((.......))).))))))...)))))).......... (-17.80 = -17.64 + -0.16)
| Location | 19,829,999 – 19,830,090 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 94.51 |
| Mean single sequence MFE | -13.90 |
| Consensus MFE | -13.28 |
| Energy contribution | -13.28 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.590669 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19829999 91 - 23771897 AAAUGAAUGUACAACAAAAUCCACUUGACCAAAAAUGUCUUGAGUAAAAGUGUCGCAUACGCGUAAAGCGUACGUAUAAUAUAGAAAUAGA .......(((((.........(((((.(((((.......))).))..))))).....(((((.....))))).)))))............. ( -14.40) >DroSec_CAF1 13679 91 - 1 AAAUGAAAGUACAACAAAAUCCACUUGACCAAAAAUGUCUUGAGUAAAAGUGUCGCAUACGCGUAAAGCGUACGUAUAAUAUAGAAAUAAA ........((((.........(((((.(((((.......))).))..))))).....(((((.....))))).)))).............. ( -13.30) >DroSim_CAF1 16923 91 - 1 AAAUGAAAGUACAACAAAAUCCACUUGACCAAAAAUGUCUUGAGUAAAAGUGUCGCAUACGCGUAAAGCGUACGUAUAAUAUAGAAAUAAA ........((((.........(((((.(((((.......))).))..))))).....(((((.....))))).)))).............. ( -13.30) >DroEre_CAF1 13663 91 - 1 AAAUAAAAGUACAACAAAAUCCACUUGACCAAAAAUGUCUUGAGUAAAAGUGUCGUAUACGCGCAGAGCGUACGUAUAUUUUAUAUAUAGA ..((((((((((.........(((((.(((((.......))).))..))))).....(((((.....))))).)))).))))))....... ( -15.20) >DroYak_CAF1 13560 91 - 1 AAAUAAAAGUACAACAAAAUCCACUUGACCAAAAAUGUCUUGAGUAAAAGUGUCGCAUACGCGUAGAGCGUACGUAUAAUUUAGAUAUAGA ........((((.........(((((.(((((.......))).))..))))).....(((((.....))))).)))).............. ( -13.30) >consensus AAAUGAAAGUACAACAAAAUCCACUUGACCAAAAAUGUCUUGAGUAAAAGUGUCGCAUACGCGUAAAGCGUACGUAUAAUAUAGAAAUAGA ........((((.........(((((.(((((.......))).))..))))).....(((((.....))))).)))).............. (-13.28 = -13.28 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:36 2006