| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,701,347 – 19,701,457 |
| Length | 110 |
| Max. P | 0.575076 |
| Location | 19,701,347 – 19,701,457 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.67 |
| Mean single sequence MFE | -29.22 |
| Consensus MFE | -19.94 |
| Energy contribution | -21.34 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575076 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19701347 110 - 23771897 UUCAUGGCCGAAAGGCAUUGUAGCAUUUUAUUUGCCAACUGAACGGAUUCUCCCUUAGUAACUAUUUUCG---------GAAAUUCUGUUUCCCUUCGGCACUCAACCCUUUUUU-UUUG ......((((((.((((..((((....)))).))))....(((((((...(((...(((....)))...)---------))...)))))))...))))))...............-.... ( -23.80) >DroSec_CAF1 15443 120 - 1 UUCCAUGCCGAAAGGCAUUGAAGCAUUUUAUUUGCCAACUGAACGGAUUCUCCCUUAGUAACUAUUUUCGGGCAAAACGGAAAUACUGUUUCCCAUCGGCACUCAACCCUUUUUUUUUUG (((.(((((....))))).)))..........((((.(((((..((.....)).)))))..........(((..((((((.....)))))))))...))))................... ( -30.60) >DroSim_CAF1 17526 119 - 1 UUCAUGGCCGAAAGGCAUUGUAGCAUUUUAUUUGCAAACUGAACGGAUUCUCCCUUAGUAACUAUUUUCGGGCAAAACGGAAAUACUGUUUCCCAUCGGCACUCAACCCUUUUUU-UUUG ......(((((.((........(((.......)))..(((((..((.....)).)))))..))......(((..((((((.....))))))))).)))))...............-.... ( -23.80) >DroEre_CAF1 16534 117 - 1 UUCAUGGCCGAAAGGCAUUGUAGCAUUUUAUUUGCCAACUGAAUGGGUUCUCCCUCAGUAACUAUUUUCGGGCGAAACGGAAAUUCUGUUUCCUGUUGGCACUCAACCCUUUUUU---CG .....(.((((((((((..((((....)))).)))).(((((..(((....))))))))......)))))).)(((((((.....)))))))..((((.....))))........---.. ( -33.10) >DroYak_CAF1 16006 117 - 1 UUCAUGGCCGAAAGGCAUUGUAGCAUUUUAUUUGCCAACUGAAUGGAUUCCCCCUUAGUAACUACUUUCGGGCGAAUCGGAAAUUCUGUUUCCUGUUGGCACUCAACCCGUUUUU---UG ......(((....)))................(((((((......((((((((...(((....)))...))).)))))((((((...)))))).)))))))..............---.. ( -34.80) >consensus UUCAUGGCCGAAAGGCAUUGUAGCAUUUUAUUUGCCAACUGAACGGAUUCUCCCUUAGUAACUAUUUUCGGGCAAAACGGAAAUUCUGUUUCCCAUCGGCACUCAACCCUUUUUU_UUUG ......(((....)))................((((.(((((..((.....)).)))))..........(((..((((((.....)))))))))...))))................... (-19.94 = -21.34 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:24 2006