Locus 7337

Sequence ID 3L_DroMel_CAF1
Location 19,695,309 – 19,695,429
Length 120
Max. P 0.590427
window11913

overview

Window 3

Location 19,695,309 – 19,695,429
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.82
Mean single sequence MFE -32.71
Consensus MFE -26.36
Energy contribution -26.64
Covariance contribution 0.28
Combinations/Pair 1.06
Mean z-score -1.43
Structure conservation index 0.81
SVM decision value 0.11
SVM RNA-class probability 0.590427
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19695309 120 + 23771897
UUCUGGUUCAUCAGCAUGUUACACAAUGUCUACUCCAGCCGGCCCUCGCUCUUCGAAAUCUCCUUCCUCAGCUCUCAGCCGGGGGUGGCCAAGAACAUUCCGCCGGCCAUCCAAAAAAAG
..((((.......((((........)))).....))))(((((....(((....(((......)))...))).....)))))((((((((..............))))))))........ ( -31.94)
>DroSec_CAF1 9582 120 + 1
UUCUGGUUCAUCAGCAUGUUACACAAUGUCUACUCCAGCCGGCCCUCGCUGUUCGAAAUCUCCUUCCUCAGCUCUCAGCCGGGGGUGGCCAAGCAAAUUCCGCCGGCCAUCCAAAAAAAG
..((((.......((((........)))).....))))(((((....((((...(((......)))..)))).....)))))((((((((..((.......)).))))))))........ ( -37.90)
>DroSim_CAF1 11168 120 + 1
UUCUGGUUCAUCAGCAUGUUACACAAUGUCUACUCCAGCCGGCCCUCGCUGUUCGAAAUCUCCUUCCUCAGCUCUCAGCCGGGGGUGGCCAAGCAAAUUCCGCCGGCCAUCCAAAAAAAG
..((((.......((((........)))).....))))(((((....((((...(((......)))..)))).....)))))((((((((..((.......)).))))))))........ ( -37.90)
>DroEre_CAF1 10108 117 + 1
UUCUGGUUCAUCAGCAUGUUACACAACGUCUACUCCAGCCGGCCCGCACUCUUCGAAAUAUCCUUCCUCAGUUCUCAACCGGGGGUGGCCAAGCGCAUCCCGCCGGCCAUC---AAGAAG
((((((((....((.(((((....))))))).....))))((((.((.......(((......)))...............((((((((...)).)))))))).))))...---.)))). ( -29.10)
>DroYak_CAF1 10044 117 + 1
UUCUGGUUCAUCAGCAUGUUACACAACGUCUACUCCAGCCGGCCCUCACUCUUCGAAAUCUCCUUCCUUAGUUCUCAACCGGGGGUGGCCAAGCGCAUCCCGCCGGCCAUC---AAAAAG
..((((......((.(((((....)))))))...))))((((.....(((....(((......)))...)))......)))).(((((((..(((.....))).)))))))---...... ( -26.70)
>consensus
UUCUGGUUCAUCAGCAUGUUACACAAUGUCUACUCCAGCCGGCCCUCGCUCUUCGAAAUCUCCUUCCUCAGCUCUCAGCCGGGGGUGGCCAAGCACAUUCCGCCGGCCAUCCAAAAAAAG
..((((......((.(((((....)))))))...))))(((((....(((....(((......)))...))).....)))))((((((((..((.......)).))))))))........ (-26.36 = -26.64 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:15 2006