Locus 733

Sequence ID 3L_DroMel_CAF1
Location 2,215,811 – 2,215,927
Length 116
Max. P 0.689721
window1123

overview

Window 3

Location 2,215,811 – 2,215,927
Length 116
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 80.52
Mean single sequence MFE -46.73
Consensus MFE -31.90
Energy contribution -32.77
Covariance contribution 0.87
Combinations/Pair 1.37
Mean z-score -1.52
Structure conservation index 0.68
SVM decision value 0.33
SVM RNA-class probability 0.689721
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2215811 116 - 23771897
CCUCAGUCACUUGCAGCAUUACCUGCUCAUCCUGCAGGAUGUGCGGUGUCUUCAGAGCCAAACGAGCAGCCCUCGCCGGUUUGUUGGCCUUCAUGUACAGGGACAUCGCCUGCUGG
.............(((((...(((((.......)))))....(((((((((((((((((((.(((((.((....))..))))))))))..)).))....)))))))))).))))). ( -40.60)
>DroVir_CAF1 291830 116 - 1
CCUCGGUUACCUGCAGCAUCAGCUGCUCAUCCUGCAGCAGCUGCGGCGUCUUUAGGGCCAGGCGUGCGGCACGCGCCGGCUUGUUGGCCUUGAGGAACAGAGCCAUUGCCUGCUGC
............((((((.(((((((((.....).)))))))).(((.(((((((((((((.((.(((((....))).)).))))))))))))))).....)))......)))))) ( -53.90)
>DroGri_CAF1 260505 116 - 1
CUUCGGUUACCUGCAGCAUUAGCUGCUCAUCCUGCAGCAGUGGUGGGGUCUUCAGGGCAAGGCGUGCGGCUCGCGCUGGCUUGUUGGCCUUGAGGAACAGUGCCAUUGCCUGCUGC
....((......(((((....)))))....)).(((((((..((((.(((((((((((.(((((((((...)))))..))))....))))))))))....).))))..).)))))) ( -52.60)
>DroWil_CAF1 343692 116 - 1
CUUCGGUUACCUGCAACAUUAGCUGCUCAUCCUGCAACAAUUGCGGCGUCUUGAGAGCCAGGCGAGCCGCUCUCGCCGGCUUAUUUGCUUUUAAGUACAAGGCCAUUGCCUGUUGC
............((((((...(((((................)))))((((((.(((((.((((((.....)))))))))))...((((....)))))))))).......)))))) ( -38.89)
>DroMoj_CAF1 279430 116 - 1
CCUCGGUUACCUGCAGCAUCAGCUGCUCAUCCUGCAGCAACUGGGGCGUCUUUAGGGCCAGGCGAGCAGCGCGUGCCGGCUUGUUGGCCUUGAGGAACAGUGCCAUGGCCUGCUCC
....((......(((((....)))))....)).(((((...(((.((.(((((((((((((.(((((.((....))..))))))))))))))))))...)).)))..).))))... ( -50.80)
>DroAna_CAF1 261523 116 - 1
CUUCCGUGACCUGUAGCAUCAGUUGCUCAUCCUGCAGAAGAUGCGGCGUUUUCAGGGCCAGCCGGGCAGCCCUGGCCGGUUUGUUGGCCUUCAGGUACAACGACAUGGCUUGCUGA
....(((.(((((..(((((..((((.......))))..))))).........((((((((((((.((....)).)))))....))))))))))))...))).............. ( -43.60)
>consensus
CCUCGGUUACCUGCAGCAUCAGCUGCUCAUCCUGCAGCAGCUGCGGCGUCUUCAGGGCCAGGCGAGCAGCCCGCGCCGGCUUGUUGGCCUUGAGGAACAGGGCCAUUGCCUGCUGC
............((((((...(((((.......)))))......(((((((((((((((((.(((((.((....))..))))))))))))))))).))...)))......)))))) (-31.90 = -32.77 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:43 2006