Locus 7329

Sequence ID 3L_DroMel_CAF1
Location 19,661,302 – 19,661,393
Length 91
Max. P 0.892767
window11905

overview

Window 5

Location 19,661,302 – 19,661,393
Length 91
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 73.25
Mean single sequence MFE -29.45
Consensus MFE -9.11
Energy contribution -10.75
Covariance contribution 1.64
Combinations/Pair 1.10
Mean z-score -2.46
Structure conservation index 0.31
SVM decision value 0.97
SVM RNA-class probability 0.892767
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19661302 91 - 23771897
ACUUA-UCCC-UGUGACUCAGCGAACACUCGCA-AGAAGACUCUCUUCUGCUGGAAGACUCGAGCUUUCGAUGGCUCGAGUCGUCGGAGGUUUA
...((-..((-(.(((((((((((....))...-(((((.....))))))))))..((((((((((......)))))))))))))).)))..)) ( -39.10)
>DroPse_CAF1 78286 77 - 1
AUUUAACAACUGGUGACUCAGCG-GCAAUCGAAAACAAGACUCUCUUUUGCUGGAAUACCUG----------------CGGCAGGAGAGGUUUA
......(..((((....))))..-)............((((.(((((((((((.(.....).----------------))))))))))))))). ( -20.00)
>DroSec_CAF1 75806 91 - 1
ACUUAAUCCC-UGUGACUCAGCG-ACACUCGCA-AGAAGACUCUCUUCUGCUGGAAGACUCGAGCACUCGAUGGCUCGAGUCGUCGGAGGUUUA
........((-(.((((((((((-.....)...-(((((.....))))))))))..(((((((((.(.....)))))))))))))).))).... ( -36.40)
>DroSim_CAF1 78582 91 - 1
ACUUAUUCCU-UGUGACUCAGCG-ACACUCGCA-AGAAGACUCUCUUCUGCUGGAAGACUCGAGCACUCGAUGGCUCGAGUCGUCGGAGGUUUA
...((..(((-(.((((((((((-.....)...-(((((.....))))))))))..(((((((((.(.....))))))))))))))))))..)) ( -34.10)
>DroEre_CAF1 75397 88 - 1
C-UUAAUCCC-UGUGACUCAGCG-ACACUCGCA-AUAAG-CCCUCUUCU-CUGGAACCGUCGAGCACUCGACCGCUCGAGUCGGCGGAGGUUUA
.-.(((.(((-((((((((.(((-.....))).-...((-(((......-..))....(((((....))))).))).))))).)))).)).))) ( -27.10)
>DroPer_CAF1 78619 77 - 1
AUUUAACAACUGGUGACUCAGCG-GCAAUCGAAAACAAGACUCUCUUUUGCUGGAAUACCUG----------------CGGCAGGAGAGGUUUA
......(..((((....))))..-)............((((.(((((((((((.(.....).----------------))))))))))))))). ( -20.00)
>consensus
ACUUAAUCCC_UGUGACUCAGCG_ACACUCGCA_AGAAGACUCUCUUCUGCUGGAAGACUCGAGCACUCGAUGGCUCGAGUCGGCGGAGGUUUA
....................(((......))).....((((.((((..((........(((((((........))))))).))..)))))))). ( -9.11 = -10.75 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:07 2006